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gnu: python-velocyto: Run guix style

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* gnu/packages/bioinformatics.scm (python-velocyto): Run guix style.

Change-Id: Ieda2b56cf13ae519e539ecef286ef63595532a7a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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Kjartan Oli Agustsson 2025-06-18 21:00:10 +00:00 • committed by Sharlatan Hellseher
parent 5853163fbf
commit 002d6e4109
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1 changed files with 20 additions and 26 deletions
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@ -21483,36 +21483,30 @@ deleted.")
(method url-fetch) (method url-fetch)
(uri (pypi-uri "velocyto" version)) (uri (pypi-uri "velocyto" version))
(sha256 (sha256
(base32 (base32 "0fgygyzqgrq32dv6a00biq1p1cwi6kbl5iqblxq1kklj6b2mzmhs"))
"0fgygyzqgrq32dv6a00biq1p1cwi6kbl5iqblxq1kklj6b2mzmhs"))
(modules '((guix build utils))) (modules '((guix build utils)))
;; Delete generated C files. ;; Delete generated C files.
(snippet (snippet '(for-each delete-file
'(for-each delete-file (find-files "." "\\.c"))))) (find-files "." "\\.c")))))
(build-system pyproject-build-system) (build-system pyproject-build-system)
(arguments (arguments
'(#:phases '(#:phases (modify-phases %standard-phases
(modify-phases %standard-phases ;; Numba needs a writable dir to cache functions.
;; Numba needs a writable dir to cache functions. (add-before 'check 'set-numba-cache-dir
(add-before 'check 'set-numba-cache-dir (lambda _
(lambda _ (setenv "NUMBA_CACHE_DIR" "/tmp"))))))
(setenv "NUMBA_CACHE_DIR" "/tmp")))))) (native-inputs (list python-joblib python-setuptools python-wheel))
(native-inputs (propagated-inputs (list python-click
(list python-joblib python-cython
python-setuptools python-h5py
python-wheel)) python-loompy
(propagated-inputs python-matplotlib
(list python-click python-numba
python-cython python-numpy
python-h5py python-pandas
python-loompy python-pysam
python-matplotlib python-scikit-learn
python-numba python-scipy))
python-numpy
python-pandas
python-pysam
python-scikit-learn
python-scipy))
(home-page "https://github.com/velocyto-team/velocyto.py") (home-page "https://github.com/velocyto-team/velocyto.py")
(synopsis "RNA velocity analysis for single cell RNA-seq data") (synopsis "RNA velocity analysis for single cell RNA-seq data")
(description (description