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gnu: r-snplocs-hsapiens-dbsnp144-grch37: Move to annotation section.
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): Move this variable up to the annotation section.
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1 changed files with 38 additions and 38 deletions
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@ -775,6 +775,44 @@ Ensembl.")
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Ensembl.")
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Ensembl.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-snplocs-hsapiens-dbsnp144-grch37
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(package
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(name "r-snplocs-hsapiens-dbsnp144-grch37")
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(version "0.99.20")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "SNPlocs.Hsapiens.dbSNP144.GRCh37"
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version 'annotation))
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(sha256
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(base32
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"1z8kx43ki1jvj7ms7pcybakcdimfwr6zpjvspkjmma97bdz093iz"))))
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(build-system r-build-system)
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;; As this package provides little more than a very large data file it
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;; doesn't make sense to build substitutes.
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(arguments `(#:substitutable? #f))
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(propagated-inputs
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(list r-biocgenerics
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r-s4vectors
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r-iranges
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r-genomeinfodb
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r-genomicranges
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r-bsgenome
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r-biostrings))
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(home-page
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"https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP144.GRCh37/")
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(synopsis "SNP locations for Homo sapiens (dbSNP Build 144)")
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(description "This package provides SNP locations and alleles for Homo
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sapiens extracted from NCBI dbSNP Build 144. The source data files used for
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this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped
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to reference genome GRCh37.p13. Note that the GRCh37.p13 genome is a
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patched version of GRCh37. However the patch doesn't alter chromosomes 1-22,
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X, Y, MT. GRCh37 itself is the same as the hg19 genome from UCSC *except* for
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the mitochondrion chromosome. Therefore, the SNPs in this package can be
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injected in @code{BSgenome.Hsapiens.UCSC.hg19} and they will land at the
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correct position but this injection will exclude chrM (i.e. nothing will be
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injected in that sequence).")
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(license license:artistic2.0)))
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(define-public r-txdb-dmelanogaster-ucsc-dm6-ensgene
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(define-public r-txdb-dmelanogaster-ucsc-dm6-ensgene
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(package
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(package
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(name "r-txdb-dmelanogaster-ucsc-dm6-ensgene")
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(name "r-txdb-dmelanogaster-ucsc-dm6-ensgene")
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@ -11271,44 +11309,6 @@ and parameters of which are trained on a set of aligned reads and a reference
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genome sequence.")
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genome sequence.")
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(license license:lgpl3)))
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(license license:lgpl3)))
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(define-public r-snplocs-hsapiens-dbsnp144-grch37
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(package
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(name "r-snplocs-hsapiens-dbsnp144-grch37")
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(version "0.99.20")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "SNPlocs.Hsapiens.dbSNP144.GRCh37"
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version 'annotation))
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(sha256
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(base32
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"1z8kx43ki1jvj7ms7pcybakcdimfwr6zpjvspkjmma97bdz093iz"))))
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(build-system r-build-system)
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;; As this package provides little more than a very large data file it
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;; doesn't make sense to build substitutes.
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(arguments `(#:substitutable? #f))
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(propagated-inputs
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(list r-biocgenerics
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r-s4vectors
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r-iranges
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r-genomeinfodb
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r-genomicranges
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r-bsgenome
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r-biostrings))
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(home-page
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"https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP144.GRCh37/")
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(synopsis "SNP locations for Homo sapiens (dbSNP Build 144)")
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(description "This package provides SNP locations and alleles for Homo
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sapiens extracted from NCBI dbSNP Build 144. The source data files used for
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this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped
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to reference genome GRCh37.p13. Note that the GRCh37.p13 genome is a
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patched version of GRCh37. However the patch doesn't alter chromosomes 1-22,
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X, Y, MT. GRCh37 itself is the same as the hg19 genome from UCSC *except* for
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the mitochondrion chromosome. Therefore, the SNPs in this package can be
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injected in @code{BSgenome.Hsapiens.UCSC.hg19} and they will land at the
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correct position but this injection will exclude chrM (i.e. nothing will be
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injected in that sequence).")
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(license license:artistic2.0)))
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(define-public r-reqon
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(define-public r-reqon
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(package
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(package
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(name "r-reqon")
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(name "r-reqon")
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