gnu: hmmer: Update to 3.2.1.

* gnu/packages/bioinformatics.scm (hmmer): Update to 3.2.1.
[origin]: Remove patch.
[license]: Change to BSD-3.
[supported-systems]: New field.
* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
This commit is contained in:
Ben Woodcroft 2018-09-22 08:19:09 +10:00
parent 78b7b9dbe9
commit 05fb1e0017
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3 changed files with 7 additions and 35 deletions

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@ -2936,18 +2936,15 @@ indexing scheme is called a @dfn{Hierarchical Graph FM index} (HGFM).")
(define-public hmmer
(package
(name "hmmer")
(version "3.1b2")
(version "3.2.1")
(source
(origin
(method url-fetch)
(uri (string-append
"http://eddylab.org/software/hmmer"
(version-major version) "/"
version "/hmmer-" version ".tar.gz"))
"http://eddylab.org/software/hmmer/hmmer-" version ".tar.gz"))
(sha256
(base32
"0djmgc0pfli0jilfx8hql1axhwhqxqb8rxg2r5rg07aw73sfs5nx"))
(patches (search-patches "hmmer-remove-cpu-specificity.patch"))))
"171bivy6xhgjsz5nv53n81pc3frnwz29ylblawk2bv46szwjjqd5"))))
(build-system gnu-build-system)
(native-inputs `(("perl" ,perl)))
(home-page "http://hmmer.org/")
@ -2957,12 +2954,10 @@ indexing scheme is called a @dfn{Hierarchical Graph FM index} (HGFM).")
sequences, and for making protein sequence alignments. It implements methods
using probabilistic models called profile hidden Markov models (profile
HMMs).")
(license (list license:gpl3+
;; The bundled library 'easel' is distributed
;; under The Janelia Farm Software License.
(license:non-copyleft
"file://easel/LICENSE"
"See easel/LICENSE in the distribution.")))))
;; hmmer uses non-portable SSE intrinsics so building fails on other
;; platforms.
(supported-systems '("x86_64-linux" "i686-linux"))
(license license:bsd-3)))
(define-public htseq
(package