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gnu: hmmer: Update to 3.2.1.
* gnu/packages/bioinformatics.scm (hmmer): Update to 3.2.1. [origin]: Remove patch. [license]: Change to BSD-3. [supported-systems]: New field. * gnu/packages/patches/hmmer-remove-cpu-specificity.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
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3 changed files with 7 additions and 35 deletions
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@ -2936,18 +2936,15 @@ indexing scheme is called a @dfn{Hierarchical Graph FM index} (HGFM).")
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(define-public hmmer
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(package
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(name "hmmer")
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(version "3.1b2")
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(version "3.2.1")
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(source
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(origin
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(method url-fetch)
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(uri (string-append
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"http://eddylab.org/software/hmmer"
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(version-major version) "/"
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version "/hmmer-" version ".tar.gz"))
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"http://eddylab.org/software/hmmer/hmmer-" version ".tar.gz"))
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(sha256
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(base32
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"0djmgc0pfli0jilfx8hql1axhwhqxqb8rxg2r5rg07aw73sfs5nx"))
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(patches (search-patches "hmmer-remove-cpu-specificity.patch"))))
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"171bivy6xhgjsz5nv53n81pc3frnwz29ylblawk2bv46szwjjqd5"))))
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(build-system gnu-build-system)
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(native-inputs `(("perl" ,perl)))
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(home-page "http://hmmer.org/")
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@ -2957,12 +2954,10 @@ indexing scheme is called a @dfn{Hierarchical Graph FM index} (HGFM).")
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sequences, and for making protein sequence alignments. It implements methods
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using probabilistic models called profile hidden Markov models (profile
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HMMs).")
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(license (list license:gpl3+
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;; The bundled library 'easel' is distributed
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;; under The Janelia Farm Software License.
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(license:non-copyleft
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"file://easel/LICENSE"
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"See easel/LICENSE in the distribution.")))))
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;; hmmer uses non-portable SSE intrinsics so building fails on other
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;; platforms.
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(supported-systems '("x86_64-linux" "i686-linux"))
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(license license:bsd-3)))
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(define-public htseq
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(package
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