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gnu: Add ocaml-mcl.

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* gnu/packages/machine-learning.scm (ocaml-mcl): New variable.
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Ben Woodcroft 2017-03-17 21:24:13 +10:00
parent ba1be533ad
commit 0a3063d640
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gnu/packages/machine-learning.scm
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@ -26,6 +26,7 @@
#:use-module (guix svn-download) #:use-module (guix svn-download)
#:use-module (guix build-system cmake) #:use-module (guix build-system cmake)
#:use-module (guix build-system gnu) #:use-module (guix build-system gnu)
#:use-module (guix build-system ocaml)
#:use-module (guix build-system r) #:use-module (guix build-system r)
#:use-module (gnu packages) #:use-module (gnu packages)
#:use-module (gnu packages autotools) #:use-module (gnu packages autotools)
@ -35,6 +36,7 @@
#:use-module (gnu packages gcc) #:use-module (gnu packages gcc)
#:use-module (gnu packages image) #:use-module (gnu packages image)
#:use-module (gnu packages maths) #:use-module (gnu packages maths)
#:use-module (gnu packages ocaml)
#:use-module (gnu packages perl) #:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config) #:use-module (gnu packages pkg-config)
#:use-module (gnu packages python) #:use-module (gnu packages python)
@ -239,6 +241,39 @@ networks) based on simulation of (stochastic) flow in graphs.")
;; http://listserver.ebi.ac.uk/pipermail/mcl-users/2016/000376.html ;; http://listserver.ebi.ac.uk/pipermail/mcl-users/2016/000376.html
(license license:gpl3))) (license license:gpl3)))
(define-public ocaml-mcl
(package
(name "ocaml-mcl")
(version "12-068oasis4")
(source
(origin
(method url-fetch)
(uri (string-append
"https://github.com/fhcrc/mcl/archive/"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1l5jbhwjpsj38x8b9698hfpkv75h8hn3kj0gihjhn8ym2cwwv110"))))
(build-system ocaml-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-before 'configure 'patch-paths
(lambda _
(substitute* "configure"
(("SHELL = /bin/sh") (string-append "SHELL = "(which "sh"))))
(substitute* "setup.ml"
(("LDFLAGS=-fPIC")
(string-append "LDFLAGS=-fPIC\"; \"SHELL=" (which "sh"))))
#t)))))
(home-page "https://github.com/fhcrc/mcl")
(synopsis "OCaml wrappers around MCL")
(description
"This package provides OCaml bindings for the MCL graph clustering
algorithm.")
(license license:gpl3)))
(define-public randomjungle (define-public randomjungle
(package (package
(name "randomjungle") (name "randomjungle")