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gnu: Add r-rnaagecalc.
* gnu/packages/bioconductor.scm (r-rnaagecalc): New variable. Change-Id: I7f03b886ce188d9393d7419b616cd96f3f8b8421
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@ -12168,6 +12168,38 @@ the available RAM.")
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HDF5 datasets.")
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HDF5 datasets.")
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(license license:bsd-2)))
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(license license:bsd-2)))
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(define-public r-rnaagecalc
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(package
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(name "r-rnaagecalc")
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(version "1.18.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "RNAAgeCalc" version))
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(sha256
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(base32 "1f4vvx56jfs3ag0z1d815ysg54ff5p5l13cqq2gl9xfq2glqv6qn"))))
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(properties `((upstream-name . "RNAAgeCalc")))
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(build-system r-build-system)
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(propagated-inputs (list r-annotationdbi
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r-ggplot2
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r-impute
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r-org-hs-eg-db
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r-recount
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r-summarizedexperiment))
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(native-inputs (list r-knitr r-testthat))
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(home-page "https://github.com/reese3928/RNAAgeCalc")
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(synopsis "Multi-tissue transcriptional age calculator")
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(description
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"It has been shown that both DNA methylation and RNA transcription are
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linked to chronological age and age related diseases. Several estimators have
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been developed to predict human aging from DNA level and RNA level. Most of
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the human transcriptional age predictor are based on microarray data and
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limited to only a few tissues. To date, transcriptional studies on aging
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using RNASeq data from different human tissues is limited. The aim of this
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package is to provide a tool for across-tissue and tissue-specific
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transcriptional age calculation based on GTEx RNASeq data.")
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(license license:gpl2)))
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(define-public r-rsamtools
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(define-public r-rsamtools
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(package
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(package
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(name "r-rsamtools")
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(name "r-rsamtools")
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