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gnu: r-txdbmaker: Add test inputs.

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* gnu/packages/bioconductor.scm (r-txdbmaker)[native-inputs]: Add r-rmariadb.
[arguments]: Add phase 'delete-bad-tests.

Change-Id: I22fe422410a41998e4fa3552cfaa1dba3e245c10
This commit is contained in:
Ricardo Wurmus 2024-11-26 12:31:41 +01:00
parent 44e4c7a6de
commit 199636cd7b
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GPG key ID: 197A5888235FACAC
1 changed files with 11 additions and 1 deletions
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gnu/packages/bioconductor.scm
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@ -13134,6 +13134,16 @@ dependencies between GO terms can be implemented and applied.")
(base32 "0k0clyrpw12b9x0nb4190lhdpd5gab4s1y645cpac66kcskc0j4p"))))
(properties `((upstream-name . "txdbmaker")))
(build-system r-build-system)
(arguments
(list
#:phases
'(modify-phases %standard-phases
(add-after 'unpack 'delete-bad-tests
(lambda _
;; These tests attempt to download files.
(for-each delete-file
'("inst/unitTests/test_makeTxDbFromUCSC.R"
"inst/unitTests/test_makeTxDbFromBiomart.R")))))))
(propagated-inputs (list r-annotationdbi
r-biobase
r-biocgenerics
@ -13150,7 +13160,7 @@ dependencies between GO terms can be implemented and applied.")
r-rtracklayer
r-s4vectors
r-ucsc-utils))
(native-inputs (list r-knitr r-runit))
(native-inputs (list r-knitr r-rmariadb r-runit))
(home-page "https://bioconductor.org/packages/txdbmaker")
(synopsis "Tools for making TxDb objects from genomic annotations")
(description