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gnu: r-txdbmaker: Add test inputs.
* gnu/packages/bioconductor.scm (r-txdbmaker)[native-inputs]: Add r-rmariadb. [arguments]: Add phase 'delete-bad-tests. Change-Id: I22fe422410a41998e4fa3552cfaa1dba3e245c10
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1 changed files with 11 additions and 1 deletions
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@ -13134,6 +13134,16 @@ dependencies between GO terms can be implemented and applied.")
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(base32 "0k0clyrpw12b9x0nb4190lhdpd5gab4s1y645cpac66kcskc0j4p"))))
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(base32 "0k0clyrpw12b9x0nb4190lhdpd5gab4s1y645cpac66kcskc0j4p"))))
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(properties `((upstream-name . "txdbmaker")))
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(properties `((upstream-name . "txdbmaker")))
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(build-system r-build-system)
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(build-system r-build-system)
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(arguments
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(list
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#:phases
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'(modify-phases %standard-phases
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(add-after 'unpack 'delete-bad-tests
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(lambda _
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;; These tests attempt to download files.
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(for-each delete-file
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'("inst/unitTests/test_makeTxDbFromUCSC.R"
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"inst/unitTests/test_makeTxDbFromBiomart.R")))))))
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(propagated-inputs (list r-annotationdbi
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(propagated-inputs (list r-annotationdbi
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r-biobase
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r-biobase
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r-biocgenerics
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r-biocgenerics
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@ -13150,7 +13160,7 @@ dependencies between GO terms can be implemented and applied.")
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r-rtracklayer
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r-rtracklayer
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r-s4vectors
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r-s4vectors
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r-ucsc-utils))
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r-ucsc-utils))
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(native-inputs (list r-knitr r-runit))
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(native-inputs (list r-knitr r-rmariadb r-runit))
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(home-page "https://bioconductor.org/packages/txdbmaker")
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(home-page "https://bioconductor.org/packages/txdbmaker")
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(synopsis "Tools for making TxDb objects from genomic annotations")
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(synopsis "Tools for making TxDb objects from genomic annotations")
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(description
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(description
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