gnu: r-gqtlbase: Disable tests.

* gnu/packages/bioconductor.scm (r-gqtlbase)[arguments]: Disable tests; remove
trailing #T from 'fix-imports phase.
[native-inputs]: Add r-runit.

Change-Id: Ic05a67edccfb5eebe312811d461d65bc49929ec9
This commit is contained in:
Ricardo Wurmus 2024-11-27 16:46:21 +01:00
parent a4a110c6c6
commit 1bdde11073
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@ -24458,15 +24458,17 @@ interval to data view, mismatch pileup, and several splicing summaries.")
(properties `((upstream-name . "gQTLBase"))) (properties `((upstream-name . "gQTLBase")))
(build-system r-build-system) (build-system r-build-system)
(arguments (arguments
`(#:phases (list
(modify-phases %standard-phases ;; Tests fail with "The file does not exist".
#:tests? #false
#:phases
'(modify-phases %standard-phases
;; This is an upstream bug. ;; This is an upstream bug.
(add-after 'unpack 'fix-imports (add-after 'unpack 'fix-imports
(lambda _ (lambda _
(substitute* "NAMESPACE" (substitute* "NAMESPACE"
((".*maxffmode.*") "") ((".*maxffmode.*") "")
(("importFrom\\(ff,.*") "import(ff)\n")) (("importFrom\\(ff,.*") "import(ff)\n")))))))
#t)))))
(propagated-inputs (propagated-inputs
(list r-batchjobs (list r-batchjobs
r-bbmisc r-bbmisc
@ -24482,7 +24484,7 @@ interval to data view, mismatch pileup, and several splicing summaries.")
r-s4vectors r-s4vectors
r-summarizedexperiment)) r-summarizedexperiment))
(native-inputs (native-inputs
(list r-knitr)) (list r-knitr r-runit))
(home-page "https://bioconductor.org/packages/gQTLBase") (home-page "https://bioconductor.org/packages/gQTLBase")
(synopsis "Infrastructure for eQTL, mQTL and similar studies") (synopsis "Infrastructure for eQTL, mQTL and similar studies")
(description (description