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gnu: r-voltron: Update to 0.2.0-5.21886d8.

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* gnu/packages/bioinformatics.scm (r-voltron): Update to 0.2.0-5.21886d8.
[arguments]: Ensure that reference to Python is accessible by adding phase
'record-python-reference.

Change-Id: Icc63ba931c7861f1e735671720106ec02f729bae
This commit is contained in:
Ricardo Wurmus 2025-03-04 19:50:58 +01:00
parent 6d62e98df9
commit 1bdf8a450f
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GPG key ID: 197A5888235FACAC
1 changed files with 18 additions and 8 deletions
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gnu/packages/bioinformatics.scm
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@ -22681,8 +22681,8 @@ patterns.")
(license license:gpl3))))
(define-public r-voltron
(let ((commit "381754801c2d0cf44c8a3a25326f3a89eef17411")
(revision "4"))
(let ((commit "21886d82292dc46521da2a03d978d78f3bd7210b")
(revision "5"))
(package
(name "r-voltron")
(version (git-version "0.2.0" revision commit))
@ -22694,7 +22694,7 @@ patterns.")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "1x8b51qlxz4zc23asz4wmvhy7fbvxnhn5svlalgdrj7bibq345qq"))))
(base32 "00d49c1zwd0nbcxc5rzzv6251bcgkcwmzpfr2k6r5l6zg58i6v3m"))))
(properties `((upstream-name . "VoltRon")))
(build-system r-build-system)
(arguments
@ -22709,11 +22709,21 @@ patterns.")
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "R/conversion.R"
(("return\\(NULL\\)")
(string-append "Sys.setenv(GUIX_PYTHONPATH=\""
(getenv "GUIX_PYTHONPATH")
"\"); return(\""
(search-input-file inputs "/bin/python3")
"\")"))))))))
(string-append
"source(paste0(system.file(package=\"VoltRon\"), \"/guix-refs.R\"));\n"
"return(guix_python);")))))
;; We do this outside of the source code to ensure that
;; references are accessible to Guix.
(add-after 'install 'record-python-reference
(lambda* (#:key inputs #:allow-other-keys)
(mkdir-p (string-append #$output "/site-library/VoltRon/"))
(call-with-output-file (string-append #$output "/site-library/VoltRon/guix-refs.R")
(lambda (port)
(format port "\
Sys.setenv(GUIX_PYTHONPATH=\"~a\");
guix_python <- \"~a\";"
(getenv "GUIX_PYTHONPATH")
(search-input-file inputs "/bin/python3")))))))))
(inputs
(list opencv
;; These Python inputs are used via reticulate.