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gnu: r-bisquerna: Add test input.

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* gnu/packages/bioconductor.scm (r-bisquerna)[properties]: Record
updater-extra-native-inputs.
[native-inputs]: Add r-plyr.

Change-Id: Ic490076e7a34e5e81b6c83ee82566c4197faaffe
This commit is contained in:
Ricardo Wurmus 2025-02-19 09:41:22 +01:00
parent 6144fe944a
commit 21ce2b4086
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1 changed files with 22 additions and 20 deletions
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gnu/packages/bioconductor.scm
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@ -7553,29 +7553,31 @@ absolute GSEA.")
;; This is a CRAN package, but it depends on r-biobase from Bioconductor.
(define-public r-bisquerna
(package
(name "r-bisquerna")
(version "1.0.5")
(source (origin
(method url-fetch)
(uri (cran-uri "BisqueRNA" version))
(sha256
(base32
"0p3p5lp69gri7vs6qfpm7br4ksbs4l7clm4nj8ki99wpqiqni23n"))))
(properties `((upstream-name . "BisqueRNA")))
(build-system r-build-system)
(propagated-inputs
(list r-biobase r-limsolve))
(native-inputs
(list r-knitr r-testthat))
(home-page "https://www.biorxiv.org/content/10.1101/669911v1")
(synopsis "Decomposition of bulk expression with single-cell sequencing")
(description "This package provides tools to accurately estimate cell type
(name "r-bisquerna")
(version "1.0.5")
(source (origin
(method url-fetch)
(uri (cran-uri "BisqueRNA" version))
(sha256
(base32
"0p3p5lp69gri7vs6qfpm7br4ksbs4l7clm4nj8ki99wpqiqni23n"))))
(properties
'((upstream-name . "BisqueRNA")
(updater-extra-native-inputs . ("r-plyr"))))
(build-system r-build-system)
(propagated-inputs
(list r-biobase r-limsolve))
(native-inputs
(list r-knitr r-plyr r-testthat))
(home-page "https://www.biorxiv.org/content/10.1101/669911v1")
(synopsis "Decomposition of bulk expression with single-cell sequencing")
(description "This package provides tools to accurately estimate cell type
abundances from heterogeneous bulk expression. A reference-based method
utilizes single-cell information to generate a signature matrix and
transformation of bulk expression for accurate regression based estimates.
A marker-based method utilizes known cell-specific marker genes to measure
transformation of bulk expression for accurate regression based estimates. A
marker-based method utilizes known cell-specific marker genes to measure
relative abundances across samples.")
(license license:gpl3)))
(license license:gpl3)))
;; This is a CRAN package, but it depends on r-bsgenome-hsapiens-ucsc-hg19
;; from Bioconductor.