gnu: python-dendropy: Update to 4.2.0.

* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.2.0.
[source]: Remove patch.
(python2-dendropy)[source]: Use the same source as python-dendropy.
* gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
This commit is contained in:
Ben Woodcroft 2017-01-01 16:37:08 +10:00
parent 322a583fcf
commit 25d84d3122
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GPG key ID: 2A6AD9F4AAC20DF6
3 changed files with 2 additions and 38 deletions

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@ -1930,19 +1930,14 @@ accessing bigWig files.")
(define-public python-dendropy
(package
(name "python-dendropy")
(version "4.1.0")
(version "4.2.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "DendroPy" version))
(sha256
(base32
"1jfz7gp18wph311w1yygbvjanb3n5mdqal439bb6myw41dwb5m63"))
;; There are two known test failures that will be fixed in the next
;; release after 4.1.0.
;; https://github.com/jeetsukumaran/DendroPy/issues/48
(patches (search-patches
"python-dendropy-exclude-failing-tests.patch"))))
"15c7s3d5gf19ljsxvq5advaa752wfi7pwrdjyhzmg85hccyvp47p"))))
(build-system python-build-system)
(home-page "http://packages.python.org/DendroPy/")
(synopsis "Library for phylogenetics and phylogenetic computing")
@ -1957,15 +1952,6 @@ trees (phylogenies) and characters.")
(let ((base (package-with-python2 (strip-python2-variant python-dendropy))))
(package
(inherit base)
;; Do not use same source as 'python-dendropy' because the patched
;; failing tests do not occur on Python 2.
(source
(origin
(method url-fetch)
(uri (pypi-uri "DendroPy" (package-version base)))
(sha256
(base32
"1jfz7gp18wph311w1yygbvjanb3n5mdqal439bb6myw41dwb5m63"))))
(arguments
`(#:python ,python-2
#:phases