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gnu: packages/python-science: Sort packages.
* gnu/packages/python-science.scm: (python-deepdish, python-modin, python-msgpack-numpy, python-pyamg, python-pyet, python-vaex-core): Sort variables alphabetically. Change-Id: I37db89f459242c6bfed8dce559539f8249c67192
This commit is contained in:
Sharlatan Hellseher
parent
638777f627
commit
26a8b63ec3
1 changed files with 326 additions and 326 deletions
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@ -706,6 +706,67 @@ possible to interoperate several fitting programs. Particular interest is
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given to programs dedicated to amplitude analyses.")
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(license license:bsd-3)))
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(define-public python-deepdish
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;; XXX: The project may no longer be compatible with the version of NumPy
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;; packed in Guix (now 1.24.4), use the latest commit containing fixes.
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;; See: <https://github.com/uchicago-cs/deepdish/issues/50>.
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;; However, there is a maintained fork that appears to be a good
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;; replacement: https://github.com/portugueslab/flammkuchen.
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(let ((commit "3f2dff7a03f1b31f6924b665ad5b8c299329c1cd")
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(revision "0"))
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(package
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(name "python-deepdish")
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(version (git-version "0.3.7" revision commit))
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/uchicago-cs/deepdish")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32 "1n3r6z5zd18kdmzyg1gkm9lqi573szlxbls1ck5wjn4a14ar9fw3"))))
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(arguments
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;; Disable few failing tests to pass the build.
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(list
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#:test-flags
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#~(list "-k" (string-append "not test_pad"
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" and not test_pad_repeat_border"
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" and not test_pad_repeat_border_corner"
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" and not test_pad_to_size"))
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#:phases
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#~(modify-phases %standard-phases
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(add-after 'unpack 'dont-vendor-six
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(lambda _
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(delete-file "deepdish/six.py")
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(substitute* "deepdish/io/hdf5io.py"
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(("from deepdish import six") "import six"))
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(substitute* "deepdish/io/ls.py"
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(("from deepdish import io, six, __version__")
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"from deepdish import io, __version__
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import six
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")))))))
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(build-system pyproject-build-system)
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(native-inputs
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(list python-pytest
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python-pandas
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python-setuptools
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python-wheel))
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(propagated-inputs
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(list python-numpy
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python-scipy
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python-six
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python-tables))
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(home-page "https://github.com/uchicago-cs/deepdish")
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(synopsis "Python library for HDF5 file saving and loading")
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(description
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"Deepdish is a Python library to load and save HDF5 files.
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The primary feature of deepdish is its ability to save and load all kinds of
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data as HDF5. It can save any Python data structure, offering the same ease
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of use as pickling or @code{numpy.save}, but with the language
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interoperability offered by HDF5.")
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(license license:bsd-3))))
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(define-public python-ecos
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(package
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(name "python-ecos")
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@ -1008,6 +1069,81 @@ volume computations for simple domains like regular polygons, disks,
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spheres, cubes, etc.")
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(license license:gpl3+)))
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(define-public python-modin
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(package
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(name "python-modin")
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(version "0.32.0")
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(source
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(origin
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;; The archive on pypi does not include all required files.
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/modin-project/modin")
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(commit version)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1vb3iffgspryb6nvwiwdnypb922vkn2yvyzc1y0wwxcb0c0fl78d"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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#:test-flags
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#~(list "--numprocesses" (number->string (min 8 (parallel-job-count)))
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;; These four tests fail because an expected error is not raised.
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"-k" "not test_binary_bad_broadcast")
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#:phases
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'(modify-phases %standard-phases
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(add-after 'unpack 'loosen-requirements
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(lambda _
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(substitute* "setup.py"
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;; Don't depend on a specific version of Pandas.
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(("pandas==") "pandas>="))))
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(replace 'check
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(lambda* (#:key tests? test-flags #:allow-other-keys)
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(when tests?
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(setenv "MODIN_ENGINE" "dask")
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(apply invoke "python" "-m" "pytest"
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"modin/tests/numpy" test-flags)
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(setenv "MODIN_ENGINE" "python")
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(apply invoke "python" "-m" "pytest"
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"modin/tests/numpy" test-flags)))))))
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(propagated-inputs
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(list python-cloudpickle
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python-dask
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python-distributed
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python-numpy
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python-packaging
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python-pandas
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python-s3fs))
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(native-inputs
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(list python-boto3
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python-jinja2
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python-lxml
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python-matplotlib
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python-msgpack
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python-openpyxl
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python-psutil
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python-pyarrow
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python-pytest
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python-pytest-benchmark
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python-pytest-cov
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python-pytest-xdist
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python-scipy
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python-sqlalchemy
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python-tables
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python-tqdm
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python-xarray
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python-xlrd
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python-wheel))
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(home-page "https://github.com/modin-project/modin")
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(synopsis "Make your pandas code run faster")
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(description
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"Modin uses Ray or Dask to provide an effortless way to speed up your
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pandas notebooks, scripts, and libraries. Unlike other distributed DataFrame
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libraries, Modin provides seamless integration and compatibility with existing
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pandas code.")
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(license license:asl2.0)))
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(define-public python-mpl-scatter-density
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(package
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(name "python-mpl-scatter-density")
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@ -1074,6 +1210,30 @@ density maps, both for interactive and non-interactive use.")
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interpolation of 1D data (for example, time series) with splines.")
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(license license:bsd-3))))
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(define-public python-msgpack-numpy
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(package
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(name "python-msgpack-numpy")
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(version "0.4.8")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "msgpack-numpy" version))
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(sha256
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(base32
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"0sbfanbkfs6c77np4vz0ayrwnv99bpn5xgj5fnf2yhhk0lcd6ry6"))))
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(build-system python-build-system)
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(propagated-inputs
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(list python-msgpack python-numpy))
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(home-page "https://github.com/lebedov/msgpack-numpy")
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(synopsis
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"Numpy data serialization using msgpack")
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(description
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"This package provides encoding and decoding routines that enable the
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serialization and deserialization of numerical and array data types provided
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by numpy using the highly efficient @code{msgpack} format. Serialization of
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Python's native complex data types is also supported.")
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(license license:bsd-3)))
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(define-public python-ndindex
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(package
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(name "python-ndindex")
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@ -1391,6 +1551,101 @@ allows arithmetic operations between them and conversions from and to
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different units.")
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(license license:bsd-3)))
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(define-public python-pyamg
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(package
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(name "python-pyamg")
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(version "5.0.1")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "pyamg" version))
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(modules '((guix build utils)))
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||||
(snippet
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;; Delete autogenerated files, regenerate in a phase.
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#~(begin
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(for-each
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(lambda (file)
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(delete-file (string-append "pyamg/amg_core/" file)))
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'("air_bind.cpp"
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"evolution_strength_bind.cpp"
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"graph_bind.cpp"
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"krylov_bind.cpp"
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"linalg_bind.cpp"
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"relaxation_bind.cpp"
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"ruge_stuben_bind.cpp"
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"smoothed_aggregation_bind.cpp"
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"tests/bind_examples_bind.cpp"))))
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||||
(sha256
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||||
(base32
|
||||
"0l3dliwynxyjvbgpmi2k8jqvkkw6fc00c8w69h6swhrkfh0ql12z"))))
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(arguments
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||||
(list
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||||
#:test-flags
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||||
;; Test installed package in order to find C++ modules.
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#~(list "--pyargs" "pyamg.tests")
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#:phases
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||||
#~(modify-phases %standard-phases
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||||
;; Regenerate the autogenerated files.
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(add-after 'unpack 'amg-core-bind-them
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||||
(lambda _
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||||
;; bindthem.py heavily depends on location to produce *_bind.cpp
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||||
;; file, make it available in tests as well.
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(copy-file "pyamg/amg_core/bindthem.py"
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"pyamg/amg_core/tests/bindthem.py")
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(with-directory-excursion "pyamg/amg_core"
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(substitute* "bindthem.py"
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(("/usr/bin/env python3") (which "python3")))
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(invoke "sh" "generate.sh"))
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(with-directory-excursion "pyamg/amg_core/tests"
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(invoke "python" "bindthem.py" "bind_examples.h")))))))
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(build-system pyproject-build-system)
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(native-inputs
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||||
(list pybind11
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python-cppheaderparser
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||||
python-pytest
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||||
python-pyyaml
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||||
python-setuptools
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||||
python-setuptools-scm
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python-wheel))
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(propagated-inputs (list python-numpy python-scipy))
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(home-page "https://github.com/pyamg/pyamg")
|
||||
(synopsis "Algebraic Multigrid Solvers in Python")
|
||||
(description "PyAMG is a Python library of Algebraic Multigrid
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(AMG) solvers. It features implementations of:
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||||
@itemize
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||||
@item Ruge-Stuben (RS) or Classical AMG
|
||||
@item AMG based on Smoothed Aggregation (SA)
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||||
@item Adaptive Smoothed Aggregation (αSA)
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||||
@item Compatible Relaxation (CR)
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||||
@item Krylov methods such as CG, GMRES, FGMRES, BiCGStab, MINRES, etc.
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||||
@end itemize")
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||||
(license license:expat)))
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||||
|
||||
(define-public python-pyet
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||||
(package
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||||
(name "python-pyet")
|
||||
(version "1.3.1")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "pyet" version))
|
||||
(sha256
|
||||
(base32 "1dblsx0bv1g453hcx5vwij1zgankwgwvhwllqkn47k578h038xvy"))))
|
||||
(build-system pyproject-build-system)
|
||||
(native-inputs
|
||||
(list python-mock
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||||
python-pytest
|
||||
python-setuptools
|
||||
python-wheel))
|
||||
(propagated-inputs
|
||||
(list python-pandas
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||||
python-xarray))
|
||||
(home-page "https://github.com/pyet-org/pyet")
|
||||
(synopsis "Python package for evapotranspiration calculation")
|
||||
(description
|
||||
"This package provides a Python library for calculating
|
||||
Evapotranspiration using various standard methods.")
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||||
(license license:expat)))
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||||
|
||||
(define-public python-pynetdicom
|
||||
(package
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||||
(name "python-pynetdicom")
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||||
|
|
@ -2458,101 +2713,6 @@ manipulation and analysis, in the style of the Polygon object in the Shapely
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library.")
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||||
(license license:expat)))
|
||||
|
||||
(define-public python-pyamg
|
||||
(package
|
||||
(name "python-pyamg")
|
||||
(version "5.0.1")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "pyamg" version))
|
||||
(modules '((guix build utils)))
|
||||
(snippet
|
||||
;; Delete autogenerated files, regenerate in a phase.
|
||||
#~(begin
|
||||
(for-each
|
||||
(lambda (file)
|
||||
(delete-file (string-append "pyamg/amg_core/" file)))
|
||||
'("air_bind.cpp"
|
||||
"evolution_strength_bind.cpp"
|
||||
"graph_bind.cpp"
|
||||
"krylov_bind.cpp"
|
||||
"linalg_bind.cpp"
|
||||
"relaxation_bind.cpp"
|
||||
"ruge_stuben_bind.cpp"
|
||||
"smoothed_aggregation_bind.cpp"
|
||||
"tests/bind_examples_bind.cpp"))))
|
||||
(sha256
|
||||
(base32
|
||||
"0l3dliwynxyjvbgpmi2k8jqvkkw6fc00c8w69h6swhrkfh0ql12z"))))
|
||||
(arguments
|
||||
(list
|
||||
#:test-flags
|
||||
;; Test installed package in order to find C++ modules.
|
||||
#~(list "--pyargs" "pyamg.tests")
|
||||
#:phases
|
||||
#~(modify-phases %standard-phases
|
||||
;; Regenerate the autogenerated files.
|
||||
(add-after 'unpack 'amg-core-bind-them
|
||||
(lambda _
|
||||
;; bindthem.py heavily depends on location to produce *_bind.cpp
|
||||
;; file, make it available in tests as well.
|
||||
(copy-file "pyamg/amg_core/bindthem.py"
|
||||
"pyamg/amg_core/tests/bindthem.py")
|
||||
(with-directory-excursion "pyamg/amg_core"
|
||||
(substitute* "bindthem.py"
|
||||
(("/usr/bin/env python3") (which "python3")))
|
||||
(invoke "sh" "generate.sh"))
|
||||
(with-directory-excursion "pyamg/amg_core/tests"
|
||||
(invoke "python" "bindthem.py" "bind_examples.h")))))))
|
||||
(build-system pyproject-build-system)
|
||||
(native-inputs
|
||||
(list pybind11
|
||||
python-cppheaderparser
|
||||
python-pytest
|
||||
python-pyyaml
|
||||
python-setuptools
|
||||
python-setuptools-scm
|
||||
python-wheel))
|
||||
(propagated-inputs (list python-numpy python-scipy))
|
||||
(home-page "https://github.com/pyamg/pyamg")
|
||||
(synopsis "Algebraic Multigrid Solvers in Python")
|
||||
(description "PyAMG is a Python library of Algebraic Multigrid
|
||||
(AMG) solvers. It features implementations of:
|
||||
@itemize
|
||||
@item Ruge-Stuben (RS) or Classical AMG
|
||||
@item AMG based on Smoothed Aggregation (SA)
|
||||
@item Adaptive Smoothed Aggregation (αSA)
|
||||
@item Compatible Relaxation (CR)
|
||||
@item Krylov methods such as CG, GMRES, FGMRES, BiCGStab, MINRES, etc.
|
||||
@end itemize")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-pyet
|
||||
(package
|
||||
(name "python-pyet")
|
||||
(version "1.3.1")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "pyet" version))
|
||||
(sha256
|
||||
(base32 "1dblsx0bv1g453hcx5vwij1zgankwgwvhwllqkn47k578h038xvy"))))
|
||||
(build-system pyproject-build-system)
|
||||
(native-inputs
|
||||
(list python-mock
|
||||
python-pytest
|
||||
python-setuptools
|
||||
python-wheel))
|
||||
(propagated-inputs
|
||||
(list python-pandas
|
||||
python-xarray))
|
||||
(home-page "https://github.com/pyet-org/pyet")
|
||||
(synopsis "Python package for evapotranspiration calculation")
|
||||
(description
|
||||
"This package provides a Python library for calculating
|
||||
Evapotranspiration using various standard methods.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-tspex
|
||||
(package
|
||||
(name "python-tspex")
|
||||
|
|
@ -3389,6 +3549,77 @@ UpSet plots are used to visualize set overlaps; like Venn diagrams but more
|
|||
readable.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-vaex-core
|
||||
(package
|
||||
(name "python-vaex-core")
|
||||
(version "4.18.1")
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://www.github.com/maartenbreddels/vaex")
|
||||
(commit (string-append "core-v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "1sp096msbzgjlwi8c1ink2bp4pjff9pvikqz1y1li8d3in4gpgdr"))
|
||||
(patches
|
||||
(search-patches "python-vaex-core-fix-tsl-use.patch"))
|
||||
(modules '((guix build utils)
|
||||
(ice-9 ftw)))
|
||||
(snippet
|
||||
#~(begin
|
||||
;; Delete everything except for vaex-core itself:
|
||||
(define (delete-except exception)
|
||||
(lambda (file)
|
||||
(unless (member file `("." ".." ,exception))
|
||||
(delete-file-recursively file))))
|
||||
(for-each (delete-except "packages") (scandir "."))
|
||||
(with-directory-excursion "packages"
|
||||
(for-each (delete-except "vaex-core") (scandir ".")))
|
||||
(for-each (lambda (file)
|
||||
(unless (member file '("." ".."))
|
||||
(rename-file
|
||||
(string-append "packages/vaex-core/" file)
|
||||
file)))
|
||||
(scandir "packages/vaex-core"))
|
||||
(delete-file-recursively "packages")
|
||||
(delete-file-recursively "vendor")))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
|
||||
;; require vaex.server and others, which require vaex-core.
|
||||
(list #:tests? #false))
|
||||
(inputs
|
||||
(list boost pcre pybind11 string-view-lite tsl-hopscotch-map))
|
||||
(propagated-inputs
|
||||
(list python-aplus
|
||||
python-blake3
|
||||
python-click ;XXX for dask
|
||||
python-cloudpickle
|
||||
python-dask
|
||||
python-filelock
|
||||
python-frozendict
|
||||
python-future
|
||||
python-nest-asyncio
|
||||
python-numpy
|
||||
python-pandas
|
||||
python-progressbar2
|
||||
python-pyarrow
|
||||
python-pydantic-2
|
||||
python-pydantic-settings
|
||||
python-pyyaml
|
||||
python-requests
|
||||
python-rich
|
||||
python-six
|
||||
python-tabulate))
|
||||
(native-inputs
|
||||
(list python-pytest python-cython-3 python-setuptools python-wheel))
|
||||
(home-page "https://www.github.com/maartenbreddels/vaex")
|
||||
(synopsis "Core of Vaex library for exploring tabular datasets")
|
||||
(description "Vaex is a high performance Python library for lazy
|
||||
Out-of-Core DataFrames (similar to Pandas), to visualize and explore big
|
||||
tabular datasets. This package provides the core modules of Vaex.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-vector
|
||||
(package
|
||||
(name "python-vector")
|
||||
|
|
@ -3712,30 +3943,6 @@ efficiently evaluate mathematical expressions involving multi-dimensional
|
|||
arrays. It is a fork of the Aesara library.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-msgpack-numpy
|
||||
(package
|
||||
(name "python-msgpack-numpy")
|
||||
(version "0.4.8")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "msgpack-numpy" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0sbfanbkfs6c77np4vz0ayrwnv99bpn5xgj5fnf2yhhk0lcd6ry6"))))
|
||||
(build-system python-build-system)
|
||||
(propagated-inputs
|
||||
(list python-msgpack python-numpy))
|
||||
(home-page "https://github.com/lebedov/msgpack-numpy")
|
||||
(synopsis
|
||||
"Numpy data serialization using msgpack")
|
||||
(description
|
||||
"This package provides encoding and decoding routines that enable the
|
||||
serialization and deserialization of numerical and array data types provided
|
||||
by numpy using the highly efficient @code{msgpack} format. Serialization of
|
||||
Python's native complex data types is also supported.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-scs
|
||||
(package
|
||||
(name "python-scs")
|
||||
|
|
@ -4123,81 +4330,6 @@ computing in Python. It extends both the @code{concurrent.futures} and
|
|||
@code{dask} APIs to moderate sized clusters.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-modin
|
||||
(package
|
||||
(name "python-modin")
|
||||
(version "0.32.0")
|
||||
(source
|
||||
(origin
|
||||
;; The archive on pypi does not include all required files.
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/modin-project/modin")
|
||||
(commit version)))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32
|
||||
"1vb3iffgspryb6nvwiwdnypb922vkn2yvyzc1y0wwxcb0c0fl78d"))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
|
||||
(list
|
||||
#:test-flags
|
||||
#~(list "--numprocesses" (number->string (min 8 (parallel-job-count)))
|
||||
;; These four tests fail because an expected error is not raised.
|
||||
"-k" "not test_binary_bad_broadcast")
|
||||
#:phases
|
||||
'(modify-phases %standard-phases
|
||||
(add-after 'unpack 'loosen-requirements
|
||||
(lambda _
|
||||
(substitute* "setup.py"
|
||||
;; Don't depend on a specific version of Pandas.
|
||||
(("pandas==") "pandas>="))))
|
||||
(replace 'check
|
||||
(lambda* (#:key tests? test-flags #:allow-other-keys)
|
||||
(when tests?
|
||||
(setenv "MODIN_ENGINE" "dask")
|
||||
(apply invoke "python" "-m" "pytest"
|
||||
"modin/tests/numpy" test-flags)
|
||||
(setenv "MODIN_ENGINE" "python")
|
||||
(apply invoke "python" "-m" "pytest"
|
||||
"modin/tests/numpy" test-flags)))))))
|
||||
(propagated-inputs
|
||||
(list python-cloudpickle
|
||||
python-dask
|
||||
python-distributed
|
||||
python-numpy
|
||||
python-packaging
|
||||
python-pandas
|
||||
python-s3fs))
|
||||
(native-inputs
|
||||
(list python-boto3
|
||||
python-jinja2
|
||||
python-lxml
|
||||
python-matplotlib
|
||||
python-msgpack
|
||||
python-openpyxl
|
||||
python-psutil
|
||||
python-pyarrow
|
||||
python-pytest
|
||||
python-pytest-benchmark
|
||||
python-pytest-cov
|
||||
python-pytest-xdist
|
||||
python-scipy
|
||||
python-sqlalchemy
|
||||
python-tables
|
||||
python-tqdm
|
||||
python-xarray
|
||||
python-xlrd
|
||||
python-wheel))
|
||||
(home-page "https://github.com/modin-project/modin")
|
||||
(synopsis "Make your pandas code run faster")
|
||||
(description
|
||||
"Modin uses Ray or Dask to provide an effortless way to speed up your
|
||||
pandas notebooks, scripts, and libraries. Unlike other distributed DataFrame
|
||||
libraries, Modin provides seamless integration and compatibility with existing
|
||||
pandas code.")
|
||||
(license license:asl2.0)))
|
||||
|
||||
(define-public python-plotnine
|
||||
(package
|
||||
(name "python-plotnine")
|
||||
|
|
@ -4655,67 +4787,6 @@ writing DICOM medical imaging data. It can read, modify and write DICOM
|
|||
data.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-deepdish
|
||||
;; XXX: The project may no longer be compatible with the version of NumPy
|
||||
;; packed in Guix (now 1.24.4), use the latest commit containing fixes.
|
||||
;; See: <https://github.com/uchicago-cs/deepdish/issues/50>.
|
||||
;; However, there is a maintained fork that appears to be a good
|
||||
;; replacement: https://github.com/portugueslab/flammkuchen.
|
||||
(let ((commit "3f2dff7a03f1b31f6924b665ad5b8c299329c1cd")
|
||||
(revision "0"))
|
||||
(package
|
||||
(name "python-deepdish")
|
||||
(version (git-version "0.3.7" revision commit))
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/uchicago-cs/deepdish")
|
||||
(commit commit)))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "1n3r6z5zd18kdmzyg1gkm9lqi573szlxbls1ck5wjn4a14ar9fw3"))))
|
||||
(arguments
|
||||
;; Disable few failing tests to pass the build.
|
||||
(list
|
||||
#:test-flags
|
||||
#~(list "-k" (string-append "not test_pad"
|
||||
" and not test_pad_repeat_border"
|
||||
" and not test_pad_repeat_border_corner"
|
||||
" and not test_pad_to_size"))
|
||||
#:phases
|
||||
#~(modify-phases %standard-phases
|
||||
(add-after 'unpack 'dont-vendor-six
|
||||
(lambda _
|
||||
(delete-file "deepdish/six.py")
|
||||
(substitute* "deepdish/io/hdf5io.py"
|
||||
(("from deepdish import six") "import six"))
|
||||
(substitute* "deepdish/io/ls.py"
|
||||
(("from deepdish import io, six, __version__")
|
||||
"from deepdish import io, __version__
|
||||
import six
|
||||
")))))))
|
||||
(build-system pyproject-build-system)
|
||||
(native-inputs
|
||||
(list python-pytest
|
||||
python-pandas
|
||||
python-setuptools
|
||||
python-wheel))
|
||||
(propagated-inputs
|
||||
(list python-numpy
|
||||
python-scipy
|
||||
python-six
|
||||
python-tables))
|
||||
(home-page "https://github.com/uchicago-cs/deepdish")
|
||||
(synopsis "Python library for HDF5 file saving and loading")
|
||||
(description
|
||||
"Deepdish is a Python library to load and save HDF5 files.
|
||||
The primary feature of deepdish is its ability to save and load all kinds of
|
||||
data as HDF5. It can save any Python data structure, offering the same ease
|
||||
of use as pickling or @code{numpy.save}, but with the language
|
||||
interoperability offered by HDF5.")
|
||||
(license license:bsd-3))))
|
||||
|
||||
(define-public python-supersmoother
|
||||
(package
|
||||
(name "python-supersmoother")
|
||||
|
|
@ -4746,77 +4817,6 @@ Friedman's SuperSmoother} based in Python. It makes use of numpy for fast
|
|||
numerical computation.")
|
||||
(license license:bsd-2)))
|
||||
|
||||
(define-public python-vaex-core
|
||||
(package
|
||||
(name "python-vaex-core")
|
||||
(version "4.18.1")
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://www.github.com/maartenbreddels/vaex")
|
||||
(commit (string-append "core-v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "1sp096msbzgjlwi8c1ink2bp4pjff9pvikqz1y1li8d3in4gpgdr"))
|
||||
(patches
|
||||
(search-patches "python-vaex-core-fix-tsl-use.patch"))
|
||||
(modules '((guix build utils)
|
||||
(ice-9 ftw)))
|
||||
(snippet
|
||||
#~(begin
|
||||
;; Delete everything except for vaex-core itself:
|
||||
(define (delete-except exception)
|
||||
(lambda (file)
|
||||
(unless (member file `("." ".." ,exception))
|
||||
(delete-file-recursively file))))
|
||||
(for-each (delete-except "packages") (scandir "."))
|
||||
(with-directory-excursion "packages"
|
||||
(for-each (delete-except "vaex-core") (scandir ".")))
|
||||
(for-each (lambda (file)
|
||||
(unless (member file '("." ".."))
|
||||
(rename-file
|
||||
(string-append "packages/vaex-core/" file)
|
||||
file)))
|
||||
(scandir "packages/vaex-core"))
|
||||
(delete-file-recursively "packages")
|
||||
(delete-file-recursively "vendor")))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
|
||||
;; require vaex.server and others, which require vaex-core.
|
||||
(list #:tests? #false))
|
||||
(inputs
|
||||
(list boost pcre pybind11 string-view-lite tsl-hopscotch-map))
|
||||
(propagated-inputs
|
||||
(list python-aplus
|
||||
python-blake3
|
||||
python-click ;XXX for dask
|
||||
python-cloudpickle
|
||||
python-dask
|
||||
python-filelock
|
||||
python-frozendict
|
||||
python-future
|
||||
python-nest-asyncio
|
||||
python-numpy
|
||||
python-pandas
|
||||
python-progressbar2
|
||||
python-pyarrow
|
||||
python-pydantic-2
|
||||
python-pydantic-settings
|
||||
python-pyyaml
|
||||
python-requests
|
||||
python-rich
|
||||
python-six
|
||||
python-tabulate))
|
||||
(native-inputs
|
||||
(list python-pytest python-cython-3 python-setuptools python-wheel))
|
||||
(home-page "https://www.github.com/maartenbreddels/vaex")
|
||||
(synopsis "Core of Vaex library for exploring tabular datasets")
|
||||
(description "Vaex is a high performance Python library for lazy
|
||||
Out-of-Core DataFrames (similar to Pandas), to visualize and explore big
|
||||
tabular datasets. This package provides the core modules of Vaex.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-pylems
|
||||
(package
|
||||
(name "python-pylems")
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue