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gnu: Add r-adam.
* gnu/packages/bioconductor.scm (r-adam): New variable.
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@ -1581,6 +1581,41 @@ expression level and gene-specific dispersion, that might facilitate the gene
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ranking by fold-change and visualization.")
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ranking by fold-change and visualization.")
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(license license:gpl3+)))
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(license license:gpl3+)))
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(define-public r-adam
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(package
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(name "r-adam")
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(version "1.10.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "ADAM" version))
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(sha256
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(base32
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"18zwci0ab54q7rdwj0n63w0i14lfrb4cccp09bcrq10gl1ki07f5"))))
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(properties `((upstream-name . "ADAM")))
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(build-system r-build-system)
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(propagated-inputs (list r-dplyr
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r-dt
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r-go-db
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r-keggrest
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r-knitr
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r-pbapply
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r-rcpp
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r-stringr
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r-summarizedexperiment))
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(native-inputs (list r-knitr))
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(home-page "https://bioconductor.org/packages/ADAM")
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(synopsis "Gene activity and diversity analysis module")
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(description
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"This software @code{ADAM} is a @dfn{Gene set enrichment analysis} (GSEA)
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package created to group a set of genes from comparative samples (control
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versus experiment) belonging to different species according to their respective
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functions. The corresponding roles are extracted from the default collections
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like Gene ontology and @dfn{Kyoto encyclopedia of genes and genomes} (KEGG).
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@code{ADAM} show their significance by calculating the p-values referring to
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gene diversity and activity. Each group of genes is called @dfn{Group of
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functionally associated genes} (GFAG).")
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(license license:gpl2+)))
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(define-public r-aneufinder
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(define-public r-aneufinder
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(package
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(package
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(name "r-aneufinder")
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(name "r-aneufinder")
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