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Merge branch 'master' into core-updates

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Marius Bakke 2017-11-19 15:01:00 +01:00
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260
gnu/packages/compression.scm
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@ -19,6 +19,7 @@
;;; Copyright © 2017 Theodoros Foradis <theodoros@foradis.org>
;;; Copyright © 2017 Stefan Reichör <stefan@xsteve.at>
;;; Copyright © 2017 Petter <petter@mykolab.ch>
;;; Copyright © 2017 Julien Lepiller <julien@lepiller.eu>
;;;
;;; This file is part of GNU Guix.
;;;
@ -41,6 +42,7 @@
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix build-system ant)
#:use-module (guix build-system cmake)
#:use-module (guix build-system gnu)
#:use-module (guix build-system perl)
@ -53,6 +55,8 @@
#:use-module (gnu packages check)
#:use-module (gnu packages curl)
#:use-module (gnu packages file)
#:use-module (gnu packages java)
#:use-module (gnu packages maths)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
@ -1035,6 +1039,38 @@ well as bzip2.")
(license (list license:gpl3+
license:public-domain)))) ; most files in lzma/
(define-public bitshuffle
(package
(name "bitshuffle")
(version "0.3.2")
(source (origin
(method url-fetch)
(uri (pypi-uri "bitshuffle" version))
(sha256
(base32
"01vcjrvsxjvv47y5hf9rps69zwv0vwd4ydhhms2jfs4rpcnlak6v"))))
(build-system python-build-system)
(arguments
`(#:tests? #f
#:phases
(modify-phases %standard-phases
(add-before 'check 'make-required-dir
(lambda _
(mkdir-p "bitshuffle/plugin")
#t)))))
(inputs
`(("numpy" ,python-numpy)
("h5py" ,python-h5py)
("hdf5" ,hdf5)))
(native-inputs
`(("cython" ,python-cython)))
(home-page "https://github.com/kiyo-masui/bitshuffle")
(synopsis "Filter for improving compression of typed binary data")
(description "Bitshuffle is an algorithm that rearranges typed, binary data
for improving compression, as well as a python/C package that implements this
algorithm within the Numpy framework.")
(license license:expat)))
(define-public snappy
(package
(name "snappy")
@ -1058,6 +1094,177 @@ for most inputs, but the resulting compressed files are anywhere from 20% to
100% bigger.")
(license license:asl2.0)))
(define bitshuffle-for-snappy
(package
(inherit bitshuffle)
(name "bitshuffle-for-snappy")
(build-system gnu-build-system)
(arguments
`(#:tests? #f
#:phases
(modify-phases %standard-phases
(replace 'configure
(lambda* (#:key outputs #:allow-other-keys)
(with-output-to-file "Makefile"
(lambda _
(format #t "\
libbitshuffle.so: src/bitshuffle.o src/bitshuffle_core.o src/iochain.o lz4/lz4.o
\tgcc -O3 -ffast-math -std=c99 -o $@ -shared -fPIC $^
%.o: %.c
\tgcc -O3 -ffast-math -std=c99 -fPIC -Isrc -Ilz4 -c $< -o $@
PREFIX:=~a
LIBDIR:=$(PREFIX)/lib
INCLUDEDIR:=$(PREFIX)/include
install: libbitshuffle.so
\tinstall -dm755 $(LIBDIR)
\tinstall -dm755 $(INCLUDEDIR)
\tinstall -m755 libbitshuffle.so $(LIBDIR)
\tinstall -m644 src/bitshuffle.h $(INCLUDEDIR)
\tinstall -m644 src/bitshuffle_core.h $(INCLUDEDIR)
\tinstall -m644 src/iochain.h $(INCLUDEDIR)
\tinstall -m644 lz4/lz4.h $(INCLUDEDIR)
" (assoc-ref outputs "out"))))
#t)))))
(inputs '())
(native-inputs '())))
(define-public java-snappy
(package
(name "java-snappy")
(version "1.1.4")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/xerial/snappy-java/archive/"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1w58diryma7qz7aa24yv8shf3flxcbbw8jgcn2lih14wgmww58ww"))))
(build-system ant-build-system)
(arguments
`(#:jar-name "snappy.jar"
#:source-dir "src/main/java"
#:phases
(modify-phases %standard-phases
(add-before 'build 'remove-binaries
(lambda _
(delete-file "lib/org/xerial/snappy/OSInfo.class")
(delete-file-recursively "src/main/resources/org/xerial/snappy/native")
#t))
(add-before 'build 'build-jni
(lambda _
;; Rebuild one of the binaries we removed earlier
(system* "javac" "src/main/java/org/xerial/snappy/OSInfo.java"
"-d" "lib")
;; Link to the dynamic bitshuffle and snappy, not the static ones
(substitute* "Makefile.common"
(("-shared")
"-shared -lbitshuffle -lsnappy"))
(substitute* "Makefile"
;; Don't try to use git, don't download bitshuffle source
;; and don't build it.
(("\\$\\(SNAPPY_GIT_UNPACKED\\) ")
"")
((": \\$\\(SNAPPY_GIT_UNPACKED\\)")
":")
(("\\$\\(BITSHUFFLE_UNPACKED\\) ")
"")
((": \\$\\(SNAPPY_SOURCE_CONFIGURED\\)") ":")
;; What we actually want to build
(("SNAPPY_OBJ:=.*")
"SNAPPY_OBJ:=$(addprefix $(SNAPPY_OUT)/, \
SnappyNative.o BitShuffleNative.o)\n")
;; Since we removed the directory structure in "native" during
;; the previous phase, we need to recreate it.
(("NAME\\): \\$\\(SNAPPY_OBJ\\)")
"NAME): $(SNAPPY_OBJ)\n\t@mkdir -p $(@D)"))
;; Finally we can run the Makefile to build the dynamic library.
(zero? (system* "make" "native"))))
;; Once we have built the shared library, we need to place it in the
;; "build" directory so it can be added to the jar file.
(add-after 'build-jni 'copy-jni
(lambda _
(copy-recursively "src/main/resources/org/xerial/snappy/native"
"build/classes/org/xerial/snappy/native")))
(add-before 'check 'fix-failing
(lambda _
;; This package assumes maven build, which puts results in "target".
;; We put them in "build" instead, so fix that.
(substitute* "src/test/java/org/xerial/snappy/SnappyLoaderTest.java"
(("target/classes") "build/classes"))
;; FIXME: probably an error
(substitute* "src/test/java/org/xerial/snappy/SnappyOutputStreamTest.java"
(("91080") "91013")))))))
(inputs
`(("osgi-framework" ,java-osgi-framework)))
(propagated-inputs
`(("bitshuffle" ,bitshuffle-for-snappy)
("snappy" ,snappy)))
(native-inputs
`(("junit" ,java-junit)
("hamcrest" ,java-hamcrest-core)
("xerial-core" ,java-xerial-core)
("classworlds" ,java-plexus-classworlds)
("perl" ,perl)))
(home-page "https://github.com/xerial/snappy-java")
(synopsis "Compression/decompression algorithm in Java")
(description "Snappy-java is a Java port of the snappy, a fast C++
compresser/decompresser.")
(license license:asl2.0)))
(define-public java-iq80-snappy
(package
(name "java-iq80-snappy")
(version "0.4")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/dain/snappy/archive/snappy-"
version ".tar.gz"))
(sha256
(base32
"0rb3zhci7w9wzd65lfnk7p3ip0n6gb58a9qpx8n7r0231gahyamf"))))
(build-system ant-build-system)
(arguments
`(#:jar-name "iq80-snappy.jar"
#:source-dir "src/main/java"
#:test-dir "src/test"
#:jdk ,icedtea-8
#:phases
(modify-phases %standard-phases
(replace 'check
(lambda _
(define (test class)
(zero? (system* "java" "-cp" (string-append (getenv "CLASSPATH")
":build/classes"
":build/test-classes")
"-Dtest.resources.dir=src/test/resources"
"org.testng.TestNG" "-testclass"
class)))
(system* "ant" "compile-tests")
(and
(test "org.iq80.snappy.SnappyFramedStreamTest")
(test "org.iq80.snappy.SnappyStreamTest"))))
(add-before 'build 'remove-hadoop-dependency
(lambda _
;; We don't have hadoop
(delete-file "src/main/java/org/iq80/snappy/HadoopSnappyCodec.java")
(delete-file "src/test/java/org/iq80/snappy/TestHadoopSnappyCodec.java")
#t)))))
(home-page "https://github.com/dain/snappy")
(native-inputs
`(("guava" ,java-guava)
("java-snappy" ,java-snappy)
("hamcrest" ,java-hamcrest-core)
("testng" ,java-testng)))
(synopsis "Java port of snappy")
(description "Iq80-snappy is a rewrite (port) of Snappy writen in pure
Java. This compression code produces a byte-for-byte exact copy of the output
created by the original C++ code, and extremely fast.")
(license license:asl2.0)))
(define-public p7zip
(package
(name "p7zip")
@ -1294,24 +1501,6 @@ or junctions, and always follows hard links.")
archives from InstallShield installers.")
(license license:expat)))
(define-public unrar
(package
(name "unrar")
(version "0.0.1")
(source (origin
(method url-fetch)
(uri (string-append
"http://download.gna.org/unrar/unrar-" version ".tar.gz"))
(sha256
(base32
"1fgmjaxffj3shyxgy765jhxwz1cq88hk0fih1bsdzyvymyyz6mz7"))))
(build-system gnu-build-system)
(home-page "http://download.gna.org/unrar")
(synopsis "RAR archive extraction tool")
(description "Unrar is a simple command-line program to list and extract
RAR archives.")
(license license:gpl2+)))
(define-public zstd
(package
(name "zstd")
@ -1634,3 +1823,38 @@ of archives.")
without having to worry how it does so, or use different interfaces for each
type by using either Perl modules, or command-line tools on your system.")
(license license:perl-license)))
(define-public java-tukaani-xz
(package
(name "java-tukaani-xz")
(version "1.6")
(source (origin
(method url-fetch)
(uri (string-append "https://tukaani.org/xz/xz-java-" version ".zip"))
(sha256
(base32
"1z3p1ri1gvl07inxn0agx44ck8n7wrzfmvkz8nbq3njn8r9wba8x"))))
(build-system ant-build-system)
(arguments
`(#:tests? #f; no tests
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'chdir
(lambda _
;; Our build system enters the first directory in the archive, but
;; the package is not contained in a subdirectory
(chdir "..")))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
;; Do we want to install *Demo.jar?
(install-file "build/jar/xz.jar"
(string-append
(assoc-ref outputs "out")
"/share/java/xz.jar")))))))
(native-inputs
`(("unzip" ,unzip)))
(home-page "https://tukaani.org")
(synopsis "XZ in Java")
(description "Tukaani-xz is an implementation of xz compression/decompression
algorithms in Java.")
(license license:public-domain)))