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gnu: r-fithic: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-fithic): Move from here...
* gnu/packages/bioconductor.scm (r-fithic): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
zimoun 2020-09-14 18:07:46 +02:00 • committed by Ricardo Wurmus
parent 7df42d3774
commit 3292f6eda0
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GPG key ID: 197A5888235FACAC
2 changed files with 26 additions and 26 deletions
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26
gnu/packages/bioconductor.scm
View file

@ -8348,6 +8348,32 @@ routines.")
objects from the @code{graph} package.") objects from the @code{graph} package.")
(license license:epl1.0))) (license license:epl1.0)))
(define-public r-fithic
(package
(name "r-fithic")
(version "1.14.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "FitHiC" version))
(sha256
(base32
"1dffkdxm08wq4kjd9j2v2625x3p6vbrk33a2zx94pwpgkghr72yp"))))
(properties `((upstream-name . "FitHiC")))
(build-system r-build-system)
(propagated-inputs
`(("r-data-table" ,r-data-table)
("r-fdrtool" ,r-fdrtool)
("r-rcpp" ,r-rcpp)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/FitHiC")
(synopsis "Confidence estimation for intra-chromosomal contact maps")
(description
"Fit-Hi-C is a tool for assigning statistical confidence estimates to
intra-chromosomal contact maps produced by genome-wide genome architecture
assays such as Hi-C.")
(license license:gpl2+)))
(define-public r-hitc (define-public r-hitc
(package (package
(name "r-hitc") (name "r-hitc")

26
gnu/packages/bioinformatics.scm
View file

@ -10599,32 +10599,6 @@ EMBL-EBI GWAS catalog.")
visualizations for publication-quality multi-panel figures.") visualizations for publication-quality multi-panel figures.")
(license license:gpl2+))) (license license:gpl2+)))
(define-public r-fithic
(package
(name "r-fithic")
(version "1.14.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "FitHiC" version))
(sha256
(base32
"1dffkdxm08wq4kjd9j2v2625x3p6vbrk33a2zx94pwpgkghr72yp"))))
(properties `((upstream-name . "FitHiC")))
(build-system r-build-system)
(propagated-inputs
`(("r-data-table" ,r-data-table)
("r-fdrtool" ,r-fdrtool)
("r-rcpp" ,r-rcpp)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/FitHiC")
(synopsis "Confidence estimation for intra-chromosomal contact maps")
(description
"Fit-Hi-C is a tool for assigning statistical confidence estimates to
intra-chromosomal contact maps produced by genome-wide genome architecture
assays such as Hi-C.")
(license license:gpl2+)))
(define-public r-dropbead (define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2")) (revision "2"))