From 353620e84a39ee445c97363b68da4ff1d16e6fe0 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 26 Nov 2024 11:24:19 +0100
Subject: [PATCH] gnu: r-megadepth: Add missing inputs and disable tests.

* gnu/packages/bioconductor.scm (r-megadepth)[propagated-inputs]: Add
megadepth.
[arguments]: Disable tests.
[inputs]: Remove empty field.
[properties]: Tell updater to keep megadepth as a propagated input.

Change-Id: Idbbc371c2d66aa7c0d7e2add13fa35a5b4f9cd77
---
 gnu/packages/bioconductor.scm | 10 +++++++---
 1 file changed, 7 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 8557c3a650e..6eeb809c59b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -24593,11 +24593,15 @@ to annotation.")
        (sha256
         (base32
          "1cay30y7cc6lpikcp4ncx69zjg4kyn152z5b8fhw159n6cb1z19n"))))
-    (properties `((upstream-name . "megadepth")))
+    (properties
+     `((upstream-name . "megadepth")
+       (updater-extra-propagated-inputs . ("megadepth"))))
     (build-system r-build-system)
-    (inputs (list))
+    ;; Tests attempt to install latest version of megadepth.
+    (arguments (list #:tests? #false))
     (propagated-inputs
-     (list r-cmdfun
+     (list megadepth
+           r-cmdfun
            r-dplyr
            r-fs
            r-genomicranges