mirror of
https://codeberg.org/guix/guix.git
synced 2025-10-02 02:15:12 +00:00
gnu: libdivsufsort: Move to datastructures.scm.
* gnu/packages/bioinformatics.scm (libdivsufsort): Move to ... * gnu/packages/datastructures.scm: ... here.
This commit is contained in:
parent
31872b3e75
commit
3546771cc8
2 changed files with 30 additions and 30 deletions
|
@ -11572,35 +11572,6 @@ provide this functionality without the necessity of drawing in a heavy-weight
|
||||||
dependency like SeqAn.")
|
dependency like SeqAn.")
|
||||||
(license (license:x11-style "https://www.boost.org/LICENSE_1_0.txt"))))
|
(license (license:x11-style "https://www.boost.org/LICENSE_1_0.txt"))))
|
||||||
|
|
||||||
(define-public libdivsufsort
|
|
||||||
(package
|
|
||||||
(name "libdivsufsort")
|
|
||||||
(version "2.0.1")
|
|
||||||
(source (origin
|
|
||||||
(method git-fetch)
|
|
||||||
(uri (git-reference
|
|
||||||
(url "https://github.com/y-256/libdivsufsort.git")
|
|
||||||
(commit version)))
|
|
||||||
(file-name (git-file-name name version))
|
|
||||||
(sha256
|
|
||||||
(base32
|
|
||||||
"0fgdz9fzihlvjjrxy01md1bv9vh12rkgkwbm90b1hj5xpbaqp7z2"))))
|
|
||||||
(build-system cmake-build-system)
|
|
||||||
(arguments
|
|
||||||
'(#:tests? #f ; there are no tests
|
|
||||||
#:configure-flags
|
|
||||||
;; Needed for rapmap and sailfish.
|
|
||||||
'("-DBUILD_DIVSUFSORT64=ON")))
|
|
||||||
(home-page "https://github.com/y-256/libdivsufsort")
|
|
||||||
(synopsis "Lightweight suffix-sorting library")
|
|
||||||
(description "libdivsufsort is a software library that implements a
|
|
||||||
lightweight suffix array construction algorithm. This library provides a
|
|
||||||
simple and an efficient C API to construct a suffix array and a
|
|
||||||
Burrows-Wheeler transformed string from a given string over a constant-size
|
|
||||||
alphabet. The algorithm runs in O(n log n) worst-case time using only 5n+O(1)
|
|
||||||
bytes of memory space, where n is the length of the string.")
|
|
||||||
(license license:expat)))
|
|
||||||
|
|
||||||
(define-public sailfish
|
(define-public sailfish
|
||||||
(package
|
(package
|
||||||
(name "sailfish")
|
(name "sailfish")
|
||||||
|
|
|
@ -1,5 +1,5 @@
|
||||||
;;; GNU Guix --- Functional package management for GNU
|
;;; GNU Guix --- Functional package management for GNU
|
||||||
;;; Copyright © 2015, 2016, 2019 Ricardo Wurmus <rekado@elephly.net>
|
;;; Copyright © 2015, 2016, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
|
||||||
;;; Copyright © 2016, 2017, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
|
;;; Copyright © 2016, 2017, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
|
||||||
;;; Copyright © 2018 Meiyo Peng <meiyo.peng@gmail.com>
|
;;; Copyright © 2018 Meiyo Peng <meiyo.peng@gmail.com>
|
||||||
;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il>
|
;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il>
|
||||||
|
@ -229,3 +229,32 @@ operations of the original object efficiently. The theoretical time
|
||||||
complexity of an operation performed on the classical data structure and the
|
complexity of an operation performed on the classical data structure and the
|
||||||
equivalent succinct data structure are (most of the time) identical.")
|
equivalent succinct data structure are (most of the time) identical.")
|
||||||
(license license:gpl3+)))
|
(license license:gpl3+)))
|
||||||
|
|
||||||
|
(define-public libdivsufsort
|
||||||
|
(package
|
||||||
|
(name "libdivsufsort")
|
||||||
|
(version "2.0.1")
|
||||||
|
(source (origin
|
||||||
|
(method git-fetch)
|
||||||
|
(uri (git-reference
|
||||||
|
(url "https://github.com/y-256/libdivsufsort.git")
|
||||||
|
(commit version)))
|
||||||
|
(file-name (git-file-name name version))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"0fgdz9fzihlvjjrxy01md1bv9vh12rkgkwbm90b1hj5xpbaqp7z2"))))
|
||||||
|
(build-system cmake-build-system)
|
||||||
|
(arguments
|
||||||
|
'(#:tests? #f ; there are no tests
|
||||||
|
#:configure-flags
|
||||||
|
;; Needed for rapmap and sailfish.
|
||||||
|
'("-DBUILD_DIVSUFSORT64=ON")))
|
||||||
|
(home-page "https://github.com/y-256/libdivsufsort")
|
||||||
|
(synopsis "Lightweight suffix-sorting library")
|
||||||
|
(description "libdivsufsort is a software library that implements a
|
||||||
|
lightweight suffix array construction algorithm. This library provides a
|
||||||
|
simple and an efficient C API to construct a suffix array and a
|
||||||
|
Burrows-Wheeler transformed string from a given string over a constant-size
|
||||||
|
alphabet. The algorithm runs in O(n log n) worst-case time using only 5n+O(1)
|
||||||
|
bytes of memory space, where n is the length of the string.")
|
||||||
|
(license license:expat)))
|
||||||
|
|
Loading…
Add table
Add a link
Reference in a new issue