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gnu: python-omero-py: Update to 5.20.0.

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* gnu/packages/python-xyz.scm (python-omero-py): Update to 5.20.0.
  [arguments]<test-flags>: Ignore collection of some tests (which should
  be fixed when updating to numpy@2).
  [native-inputs]: Add python-portalocker. Update omero-blitz to 5.8.2.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
This commit is contained in:
Nicolas Graves 2025-04-22 14:04:04 +02:00 • committed by Sharlatan Hellseher
parent 03c4dc54a7
commit 3901b539d2
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1 changed files with 91 additions and 77 deletions
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38
gnu/packages/python-xyz.scm
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@ -5155,23 +5155,29 @@ of @code{xmlfile}.")
(license license:expat)))
(define-public python-omero-py
(let ((omero-blitz-version "5.8.2"))
(package
(name "python-omero-py")
(version "5.13.1")
(source (origin
(version "5.20.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/ome/omero-py")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"0n94v5dpmh873hjqd9k9ky85iab4xh37ibmi13rqpclv01ibvvxa"))))
(base32 "02zsw1p35n6lkqh410qpgw7c4467dkbg0hxly3gjqrwdh349j47g"))))
(build-system pyproject-build-system)
(arguments
(list
;; #:tests? #f
#:test-flags
'(list "-m" "not broken" "-rf" "test" "-s"
#~(list
"-m" "not broken" "-rf" "test" "-s"
;; XXX: Failing collection because of Numpy compatibility.
"--ignore=test/unit/tablestest/test_hdfstorage.py"
"--ignore=test/unit/tablestest/test_servants.py"
;; TestImport tries to download Java things; TestSessions
;; and TestBuildQuery require networking.
"-k" "not TestImport and not TestSessions and not TestBuildQuery")
@ -5187,7 +5193,11 @@ of @code{xmlfile}.")
(let ((zip-file
(match inputs
(((labels . files) ...)
(find (cut string-suffix? "omero-blitz-5.5.5-python.zip" <>)
(find (cut string-suffix?
(string-append "omero-blitz-"
#$omero-blitz-version
"-python.zip")
<>)
files)))))
(setenv "ZIP_FILE"
(or zip-file (error "failed to find artifact file"))))))
@ -5208,15 +5218,16 @@ of @code{xmlfile}.")
(propagated-inputs
(list python-appdirs
python-future
python-numpy
python-numpy-2
python-pillow
python-pyyaml
python-requests
python-tables
python-zeroc-ice-3.6))
(native-inputs
(list python-mox3
(list python-portalocker
python-pytest
python-pytest-mock
python-pytest-rerunfailures
python-pytest-xdist
python-setuptools
@ -5224,15 +5235,18 @@ of @code{xmlfile}.")
unzip
(origin
(method url-fetch)
(uri "https://artifacts.openmicroscopy.org/artifactory/\
ome.releases/org/openmicroscopy/omero-blitz/5.5.5/omero-blitz-5.5.5-python.zip")
(uri (format #f "\
https://artifacts.openmicroscopy.org/artifactory/ome.releases/org/\
openmicroscopy/omero-blitz/~a/omero-blitz-~a-python.zip"
omero-blitz-version
omero-blitz-version))
(sha256
(base32 "0wyja1zv19c1r3m31gsp555jzj3cg2v2pl00zlybpw3qd36yffwc")))))
(base32 "1nb17xmx6n7i5vkcw661iq42yfgc3i0gmhz3x8iwcrhp8pajzm3l")))))
(home-page "https://github.com/ome/omero-py")
(synopsis "Python bindings to the OMERO.blitz server")
(description "This package provides Python bindings to the OMERO.blitz
server.")
(license license:gpl2)))
(license license:gpl2))))
(define-public python-openpyxl
(package