Merge branch 'master' into staging

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Marius Bakke 2022-07-13 23:34:58 +02:00
commit 4442a5db77
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@ -94,7 +94,7 @@
;;; Copyright © 2020, 2021 Zheng Junjie <873216071@qq.com>
;;; Copyright © 2020 EuAndreh <eu@euandre.org>
;;; Copyright © 2021, 2022 Morgan Smith <Morgan.J.Smith@outlook.com>
;;; Copyright © 2021 Sharlatan Hellseher <sharlatanus@gmail.com>
;;; Copyright © 2021, 2022 Sharlatan Hellseher <sharlatanus@gmail.com>
;;; Copyright © 2021 Ellis Kenyő <me@elken.dev>
;;; Copyright © 2021 LibreMiami <packaging-guix@libremiami.org>
;;; Copyright © 2021 Xinglu Chen <public@yoctocell.xyz>
@ -912,6 +912,77 @@ progress bar and a percentage indicator object that let you track the progress
of a loop structure or other iterative computation.")
(license license:bsd-3)))
(define-public python-glymur
(package
(name "python-glymur")
(version "0.10.1")
(source
(origin
(method git-fetch) ; no tests data in PyPi package
(uri (git-reference
(url "https://github.com/quintusdias/glymur")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "1cq9r8vzwvds1kasy5gc2rxw034jh9l43rraps1n739072pfz6qg"))))
(build-system python-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'patch-library-locations
(lambda* (#:key inputs #:allow-other-keys)
;; XXX: It's a workaround for Python inability to find the
;; .so libraries with ctypes.util.find_library()
(substitute* '("glymur/config.py")
(("path = find_library\\(libname\\)")
(string-append
"if libname == \"openjp2\":\n"
" path = \""
(search-input-file inputs "/lib/libopenjp2.so") "\"\n"
" elif libname == \"tiff\":\n"
" path = \""
(search-input-file inputs "/lib/libtiff.so") "\"\n"
" elif libname == \"c\":\n"
" path = \""
(search-input-file inputs "/lib/libc.so.6") "\"\n")))))
;; TODO: implement as a feature of python-build-system (PEP-621,
;; PEP-631, PEP-660)
(replace 'build
(lambda _
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)
;; ZIP does not support timestamps before 1980.
(setenv "SOURCE_DATE_EPOCH" "315532800")
(invoke "python" "-m" "build" "--wheel" "--no-isolation" ".")))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let ((whl (car (find-files "dist" "\\.whl$"))))
(invoke "pip" "--no-cache-dir" "--no-input"
"install" "--no-deps" "--prefix" #$output whl))))
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
;; Failing test due to inability of
;; ctypes.util.find_library() to determine library path,
;; which is patched above.
(delete-file "tests/test_config.py")
(invoke "python" "-m" "pytest" "-vv" "tests")))))))
(native-inputs
(list python-pypa-build python-pytest))
(inputs
(list openjpeg ; glymur/lib/openjp2.py
libtiff)) ; glymur/lib/tiff.py
(propagated-inputs
(list python-lxml
python-numpy
python-packaging))
(home-page "https://github.com/quintusdias/glymur")
(synopsis "Python interface to OpenJPEG and LibTIFF")
(description
"This package provides Python interface to the OpenJPEG library which
allows one to read and write JPEG 2000 files")
(license license:expat)))
(define-public python-gphoto2
(package
(name "python-gphoto2")
@ -2949,6 +3020,48 @@ software.")
(inherit (package-with-python2 scons))
(name "scons-python2")))
(define-public python-exceptiongroup
(package
(name "python-exceptiongroup")
(version "1.0.0rc8")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/agronholm/exceptiongroup")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32
"0xsbpv22n51p6yvyvz231mf8zhbi1i88b4zmacaxxx31zrq5ifv4"))))
(build-system python-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
;; XXX: PEP 517 manual build/install procedures copied from
;; python-isort.
(replace 'build
(lambda _
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)
;; ZIP does not support timestamps before 1980.
(setenv "SOURCE_DATE_EPOCH" "315532800")
(invoke "python" "-m" "build" "--wheel" "--no-isolation" ".")))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let ((whl (car (find-files "dist" "\\.whl$"))))
(invoke "pip" "--no-cache-dir" "--no-input"
"install" "--no-deps" "--prefix" #$output whl))))
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(invoke "pytest" "-vv" "tests")))))))
(native-inputs (list python-flit-scm python-pypa-build python-pytest))
(home-page "https://github.com/agronholm/exceptiongroup")
(synopsis "PEP 654 backport from Python 3.11")
(description "This is a backport of the @code{BaseExceptionGroup} and
@code{ExceptionGroup} classes from Python 3.11.")
(license license:expat)))
(define-public python-extension-helpers
(package
(name "python-extension-helpers")
@ -5065,6 +5178,34 @@ which can produce feeds in RSS 2.0, RSS 0.91, and Atom formats.")
errors when data is invalid.")
(license license:expat)))
(define-public python-pydantic-cli
(package
(name "python-pydantic-cli")
(version "4.3.0")
(source
(origin
(method git-fetch) ;for tests
(uri (git-reference
(url "https://github.com/mpkocher/pydantic-cli")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"1v4dx6n60rbsan5zpw2rgdih7lb3h0xclagn1p6zfwl0r9l9cvym"))))
(build-system python-build-system)
(propagated-inputs
(list python-pydantic))
(native-inputs
(list python-black
python-mypy
python-pytest))
(home-page "https://github.com/mpkocher/pydantic-cli")
(synopsis "Turn Pydantic defined data models into CLI tools")
(description
"@code{python-pydantic} enables specifying @acronym{CLI, Command Line
Interfaces} via data models provided in the JSON format.")
(license license:expat)))
(define-public python-pydocstyle
(package
(name "python-pydocstyle")
@ -6314,7 +6455,7 @@ toolkits.")
(string-append info "/matplotlib-figures"))))))))
(native-inputs
(list graphviz
inkscape
inkscape/stable
python-colorspacious
python-mpl-sphinx-theme
python-scipy
@ -7813,27 +7954,6 @@ Pexpect works like Don Libes Expect. Pexpect allows your script to spawn a
child application and control it as if a human were typing commands.")
(license license:isc)))
(define-public python-setuptools-scm
(package
(name "python-setuptools-scm")
(version "6.3.2")
(source (origin
(method url-fetch)
(uri (pypi-uri "setuptools_scm" version))
(sha256
(base32 "1wm0i27siyy1yqr9rv7lqvb65agay9051yi8jzmi8dgb3q4ai6m4"))))
(build-system python-build-system)
(propagated-inputs
`(("python-packaging",python-packaging-bootstrap)
("python-tomli" ,python-tomli)))
(home-page "https://github.com/pypa/setuptools_scm/")
(synopsis "Manage Python package versions in SCM metadata")
(description
"Setuptools_scm handles managing your Python package versions in
@dfn{software configuration management} (SCM) metadata instead of declaring
them as the version argument or in a SCM managed file.")
(license license:expat)))
(define-public python-sexpdata
(package
(name "python-sexpdata")
@ -11501,14 +11621,15 @@ distribution. It is not intended as an end-user tool.")
(define-public python-immutables
(package
(name "python-immutables")
(version "0.14")
(version "0.18")
(source
(origin
(method url-fetch)
(uri (pypi-uri "immutables" version))
(sha256
(base32 "0y0aqw29g525frdnmv9paljzacpp4s21sadfbca5b137iciwr8d0"))))
(base32 "1x4cinh0xbl6p6p2yfm2s07mxxy3lf0zzai9gqpydk4482bwfdjk"))))
(build-system python-build-system)
(native-inputs (list python-mypy python-pytest))
(home-page "https://github.com/MagicStack/immutables")
(synopsis "High-performance immutable mapping type for Python")
(description
@ -13027,7 +13148,7 @@ time.")
"and not test_execute_widgets_from_nbconvert "
"and not test_execute_multiple_notebooks ")))))))))
(inputs
(list inkscape pandoc))
(list inkscape/stable pandoc))
(native-inputs
(list python-ipykernel
;; Adding ipywidgets would create a cycle.
@ -16006,7 +16127,27 @@ graphviz.")
(snippet
'(begin
;; unbunding libev and c-ares
(delete-file-recursively "deps")))))
(delete-file-recursively "deps")
;; Remove cythonized files.
(with-directory-excursion "src/gevent"
(for-each delete-file
(append (list "resolver/cares.c"
"queue.c"
"local.c"
"libev/corecext.h"
"libev/corecext.c"
"greenlet.c"
"event.c"
"_waiter.c"
"_tracer.c"
"_semaphore.c"
"_imap.c"
"_ident.c"
"_hub_primitives.c"
"_hub_local.c"
"_greenlet_primitives.c"
"_abstract_linkable.c")
(find-files "." "\\.html$"))))))))
(build-system python-build-system)
(arguments
`(#:modules ((ice-9 ftw)
@ -16094,8 +16235,9 @@ graphviz.")
(propagated-inputs
(list python-greenlet python-zope-event python-zope-interface))
(native-inputs
;; For tests.
(list python-dnspython python-psutil python-objgraph))
(list python-cython
;; For tests.
python-dnspython python-psutil python-objgraph))
(inputs
(list c-ares libev))
(home-page "https://www.gevent.org/")
@ -16523,6 +16665,73 @@ smaller. Small integers are encoded into a single byte, and typical short
strings require only one extra byte in addition to the strings themselves.")
(license license:asl2.0)))
(define-public python-cattrs
(package
(name "python-cattrs")
(version "22.1.0")
(source (origin
(method git-fetch) ;for tests
(uri (git-reference
(url "https://github.com/python-attrs/cattrs")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"1n0h25gj6zd02kqyl040xpdvg4hpy1j92716sz0rg019xjqqijqb"))))
(build-system python-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
;; XXX: PEP 517 manual build copied from python-isort.
(add-after 'unpack 'adjust-for-older-attrs
;; Our older attrs package is using the 'attr' rather than 'attrs'
;; namespace.
;; TODO: Remove after python-attrs is updated to >= 21.4.0.
(lambda _
(substitute* (find-files "." "\\.py$")
(("from attrs\\b")
"from attr"))))
(replace 'build
(lambda _
(invoke "python" "-m" "build" "--wheel" "--no-isolation" ".")))
(replace 'install
(lambda _
(let ((whl (car (find-files "dist" "\\.whl$"))))
(invoke "pip" "--no-cache-dir" "--no-input"
"install" "--no-deps" "--prefix" #$output whl))))
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
;; Do not use the 'pytest' binary as it hard-codes an older
;; python-hypothesis version near the beginning of its
;; GUIX_PYTHONPATH.
(invoke "python" "-m" "pytest" "-vv" "-c" "/dev/null" "tests"
"-n" (number->string (parallel-job-count))
;; This test requires orjson, which needs the maturin
;; build system and new Rust dependencies.
"--ignore" "tests/test_preconf.py")))))))
(native-inputs
(list python-hypothesis-next
python-immutables
python-msgpack
python-poetry-core
python-pymongo ;for the bson module
python-pypa-build
python-pytest
python-pytest-xdist))
(propagated-inputs
(list python-attrs
python-exceptiongroup
python-typing-extensions))
(home-page "https://github.com/python-attrs/cattrs")
(synopsis "Python library for structuring and unstructuring data")
(description "@code{cattrs} is an Python library for structuring and
unstructuring data. @code{cattrs} works best with @code{attrs} classes,
@code{dataclasses} and the usual Python collections, but other kinds of
classes can also be supported by manually registering converters.")
(license license:expat)))
(define-public python-cachy
(package
(name "python-cachy")
@ -17033,17 +17242,31 @@ scans through a file and detects issues.")
(file-name (git-file-name name version))
(sha256
(base32
"07drmi3ai49jw5n23ibkambcgijqcw073ihypjgxfnks5lv4yqy1"))))
"07drmi3ai49jw5n23ibkambcgijqcw073ihypjgxfnks5lv4yqy1"))
(modules '((guix build utils)))
(snippet
;; Adjust comprehension syntax for Python > 3.8.
;; From <https://github.com/davidhalter/jedi/issues/1824>.
'(substitute* "test/completion/lambdas.py"
(("if lambda: 3")
"if (lambda: 3)")))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'fix-completion-test
(lambda _
;; This resolves a failure in the 'test_completion' test (see:
;; https://github.com/davidhalter/jedi/issues/1824).
;; TODO: Remove after a new release is made (currently: 0.18.1).
(substitute* "test/completion/lambdas.py"
(("\\[a for a in \\[1,2\\] if lambda: 3\\]\\[0\\]")
"[a for a in [1,2] if (lambda: 3)][0]"))))
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(setenv "HOME" "/tmp")
(invoke "python" "-m" "pytest" "-vv"))
#t)))))
(invoke "python" "-m" "pytest" "-vv")))))))
(native-inputs
(list python-colorama python-docopt python-pytest))
(propagated-inputs
@ -17488,6 +17711,50 @@ multitouch applications.")
Design spec without sacrificing ease of use or application performance.")
(license license:expat)))
(define-public python-asynckivy
(package
(name "python-asynckivy")
(version "0.5.3")
(source
(origin
(method url-fetch)
(uri
(pypi-uri "asynckivy" version))
(sha256
(base32 "0ivjvch8yn3k1ybfp7c1nm8mhc0ymg7d04mq54lly7yjvg0jvcni"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-before 'check 'set-home
(lambda _
;; 'kivy/__init__.py' wants to create $HOME/.kivy.
(setenv "HOME" (getcwd)))))))
(propagated-inputs (list python-kivy python-asyncgui))
(home-page "https://github.com/gottadiveintopython/asynckivy")
(synopsis "Async library for Kivy")
(description
"This package provides async versions of Kivy functions to avoid the
callback-heavy mode of interaction typical in some Kivy applications.")
(license license:expat)))
(define-public python-asyncgui
(package
(name "python-asyncgui")
(version "0.5.3")
(source (origin
(method url-fetch)
(uri (pypi-uri "asyncgui" version))
(sha256
(base32
"0614130afg2qc1qq4p82piskvvx6lpjl4nlsakbjzdyd78xywnb7"))))
(build-system python-build-system)
(home-page "https://github.com/gottadiveintopython/asyncgui")
(synopsis "Enables async/await without an event loop")
(description "This package provides support for async/await applications
without requiring an event loop, useful for creative responsive GUIs.")
(license license:expat)))
(define-public python-binaryornot
(package
(name "python-binaryornot")
@ -17621,13 +17888,13 @@ JSON) codec.")
(define-public python-pymongo
(package
(name "python-pymongo")
(version "3.7.2")
(version "4.1.1")
(source (origin
(method url-fetch)
(uri (pypi-uri "pymongo" version))
(sha256
(base32
"0zis4707r9hdg5qgkhp3wss9camr9h56ixyfc8n9dxwlnnly4x4c"))))
"1m9hc2a4kgg10xy3g5x00z4a7rrk9s0rbf5qfypwnhq0kdfg5f6p"))))
(build-system python-build-system)
(propagated-inputs
(list python-certifi))
@ -18733,6 +19000,15 @@ from the header, as well as section details and data available.")
(build-system python-build-system)
(arguments
`(#:phases (modify-phases %standard-phases
,@(if (target-riscv64?)
;; TODO: Remove the conditional on staging.
`((add-after 'unpack 'remove-test-hypothesis-deadlines
(lambda _
(substitute* "tests/test_make.py"
(("assume, given") "assume, given, settings")
(("( +)@given" all spaces)
(string-append spaces "@settings(deadline=None)\n" all))))))
'())
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
@ -29859,3 +30135,23 @@ with it, and it also implements recommendations from the
and names, built from Unicode CLDR and the IANA subtag registry, if you
install @code{python-language-data}.")
(license license:expat)))
(define-public python-geomet
(package
(name "python-geomet")
(version "0.3.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "geomet" version))
(sha256
(base32
"06rfvadx5dr5xrgsc5bsmqil9c9kff6i13xl988gy0gfg0cl2lnb"))))
(build-system python-build-system)
(propagated-inputs (list python-click python-six))
(home-page "https://github.com/geomet/geomet")
(synopsis "Convert GeoJSON to WKT/WKB (Well-Known Text/Binary) or
GeoPackage Binary")
(description "This package provides utilities and functions for converting
GeoJSON to WKT/WKB (Well-Known Text/Binary) or GeoPackage Binary, and vice
versa. Extended WKB/WKT are also supported.")
(license license:asl2.0)))