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gnu: Add r-helloranges.
* gnu/packages/bioconductor.scm (r-helloranges): New variable. Change-Id: I18c7cb9ff0011647ba68744373444788c4743849
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@ -18267,6 +18267,51 @@ corresponding dendrogram is plotted. Optionally, panels with additional
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information about samples and features can be added to the plot.")
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(license license:gpl2+)))
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(define-public r-helloranges
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(package
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(name "r-helloranges")
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(version "1.32.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "HelloRanges" version))
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(sha256
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(base32 "11hmnqvmhd7rn5dcm20wg109sp8cmaq5k06x0cyaimi0dmf1psxv"))))
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(properties
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'((upstream-name . "HelloRanges")
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(updater-extra-native-inputs . ("r-biocstyle" "r-runit"))))
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(build-system r-build-system)
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;; Vignettes need Internet access.
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(arguments (list #:test-types '(list "tests")))
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(propagated-inputs (list r-biocgenerics
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r-biocio
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r-biostrings
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r-bsgenome
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r-docopt
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r-genomeinfodb
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r-genomicalignments
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r-genomicfeatures
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r-genomicranges
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r-iranges
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r-rsamtools
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r-rtracklayer
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r-s4vectors
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r-summarizedexperiment
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r-variantannotation))
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(native-inputs
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(list r-biocstyle
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r-hellorangesdata
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r-txdb-hsapiens-ucsc-hg19-knowngene
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r-runit))
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(home-page "https://bioconductor.org/packages/HelloRanges")
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(synopsis "Introduce *Ranges to bedtools users")
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(description
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"This package translates bedtools command-line invocations to R code
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calling functions from the Bioconductor @code{*Ranges} infrastructure. This
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is intended to educate novice Bioconductor users and to compare the syntax and
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semantics of the two frameworks.")
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(license license:gpl2+)))
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(define-public r-gosemsim
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(package
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(name "r-gosemsim")
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