gnu: Add r-helloranges.

* gnu/packages/bioconductor.scm (r-helloranges): New variable.

Change-Id: I18c7cb9ff0011647ba68744373444788c4743849
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Ricardo Wurmus 2025-02-27 20:58:40 +01:00
parent a814243b36
commit 4aa6264468
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@ -18267,6 +18267,51 @@ corresponding dendrogram is plotted. Optionally, panels with additional
information about samples and features can be added to the plot.")
(license license:gpl2+)))
(define-public r-helloranges
(package
(name "r-helloranges")
(version "1.32.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "HelloRanges" version))
(sha256
(base32 "11hmnqvmhd7rn5dcm20wg109sp8cmaq5k06x0cyaimi0dmf1psxv"))))
(properties
'((upstream-name . "HelloRanges")
(updater-extra-native-inputs . ("r-biocstyle" "r-runit"))))
(build-system r-build-system)
;; Vignettes need Internet access.
(arguments (list #:test-types '(list "tests")))
(propagated-inputs (list r-biocgenerics
r-biocio
r-biostrings
r-bsgenome
r-docopt
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-iranges
r-rsamtools
r-rtracklayer
r-s4vectors
r-summarizedexperiment
r-variantannotation))
(native-inputs
(list r-biocstyle
r-hellorangesdata
r-txdb-hsapiens-ucsc-hg19-knowngene
r-runit))
(home-page "https://bioconductor.org/packages/HelloRanges")
(synopsis "Introduce *Ranges to bedtools users")
(description
"This package translates bedtools command-line invocations to R code
calling functions from the Bioconductor @code{*Ranges} infrastructure. This
is intended to educate novice Bioconductor users and to compare the syntax and
semantics of the two frameworks.")
(license license:gpl2+)))
(define-public r-gosemsim
(package
(name "r-gosemsim")