gnu: Add r-helloranges.

* gnu/packages/bioconductor.scm (r-helloranges): New variable.

Change-Id: I18c7cb9ff0011647ba68744373444788c4743849
This commit is contained in:
Ricardo Wurmus 2025-02-27 20:58:40 +01:00
parent a814243b36
commit 4aa6264468
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@ -18267,6 +18267,51 @@ corresponding dendrogram is plotted. Optionally, panels with additional
information about samples and features can be added to the plot.") information about samples and features can be added to the plot.")
(license license:gpl2+))) (license license:gpl2+)))
(define-public r-helloranges
(package
(name "r-helloranges")
(version "1.32.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "HelloRanges" version))
(sha256
(base32 "11hmnqvmhd7rn5dcm20wg109sp8cmaq5k06x0cyaimi0dmf1psxv"))))
(properties
'((upstream-name . "HelloRanges")
(updater-extra-native-inputs . ("r-biocstyle" "r-runit"))))
(build-system r-build-system)
;; Vignettes need Internet access.
(arguments (list #:test-types '(list "tests")))
(propagated-inputs (list r-biocgenerics
r-biocio
r-biostrings
r-bsgenome
r-docopt
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-iranges
r-rsamtools
r-rtracklayer
r-s4vectors
r-summarizedexperiment
r-variantannotation))
(native-inputs
(list r-biocstyle
r-hellorangesdata
r-txdb-hsapiens-ucsc-hg19-knowngene
r-runit))
(home-page "https://bioconductor.org/packages/HelloRanges")
(synopsis "Introduce *Ranges to bedtools users")
(description
"This package translates bedtools command-line invocations to R code
calling functions from the Bioconductor @code{*Ranges} infrastructure. This
is intended to educate novice Bioconductor users and to compare the syntax and
semantics of the two frameworks.")
(license license:gpl2+)))
(define-public r-gosemsim (define-public r-gosemsim
(package (package
(name "r-gosemsim") (name "r-gosemsim")