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gnu: python-pyjanitor: Fix build.
* gnu/packages/python-science.scm (python-pyjanitor): Fix build. [propagated-inputs]: Add python-requests. [native-inputs]: Remove python-wheel. [arguments] <#:test-flags>: Disable failing test. Change-Id: I74b40149a3b87f0e748d79be2aae9978fa18de52 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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1 changed files with 24 additions and 16 deletions
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@ -3930,19 +3930,25 @@ production-critical data pipelines or reproducible research settings. With
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;; marked turtle can be skipped using "-m" "not turtle".
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(arguments
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(list
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#:test-flags '(list
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"-n" (number->string (parallel-job-count))
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;; Tries to connect to the internet.
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"-k" (string-append "not test_is_connected"
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;; Test files are not included
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" and not test_read_commandline_bad_cmd")
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;; Test files are not included
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;; tests: 1042 passed, 2 skipped, 2 deselected, 45 xfailed, 6 xpassed,
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;; 735 warnings
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#:test-flags
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;; The tests take quite long, so consider adding the "-n" line and
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;; adding python-pytest-xdist to the native-inputs when testing.
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;; However, the tests are not deterministic when ran with -n, so
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;; disable again before committing.
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#~(list ;; "-n" (number->string (parallel-job-count))
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;; Test files are not included.
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"--ignore=tests/io/test_read_csvs.py"
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;; Polars has not been packaged yet.
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"--ignore=tests/polars"
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;; PySpark has not been packaged yet.
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"--ignore=tests/spark/functions/test_clean_names_spark.py"
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"--ignore=tests/spark/functions/test_update_where_spark.py")
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"--ignore=tests/spark/functions/test_update_where_spark.py"
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;; Tries to connect to the internet.
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"-k" (string-append "not test_is_connected"
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;; Test files are not included.
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" and not test_read_commandline_bad_cmd"))
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#:phases
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#~(modify-phases %standard-phases
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(add-before 'check 'set-env-ci
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@ -3950,20 +3956,22 @@ production-critical data pipelines or reproducible research settings. With
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;; Some tests are skipped if the JANITOR_CI_MACHINE
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;; variable is not set.
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(setenv "JANITOR_CI_MACHINE" "1"))))))
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;; TODO: Remove python-requests and inject its target data to make the
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;; package behaviour reproducible.
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(propagated-inputs (list python-multipledispatch
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python-natsort
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python-pandas-flavor
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python-requests
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python-scipy
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;; Optional imports.
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python-biopython ;biology submodule
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python-unyt)) ;engineering submodule
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(native-inputs (list python-pytest
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python-pytest-xdist
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;;python-pytest-xdist ;only for -n when testing
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python-setuptools
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;; Optional imports. We do not propagate them due to
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;; their size.
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python-numba ;speedup of joins
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python-setuptools
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python-wheel
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rdkit)) ;chemistry submodule
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(home-page "https://github.com/pyjanitor-devs/pyjanitor")
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(synopsis "Tools for cleaning and transforming pandas DataFrames")
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