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gnu: gemma: Refresh package style.
* gnu/packages/bioinformatics.scm (gemma): Apply G-Expressions, remove trailing #t from procedures and lambdas, fix indentation. [version]: Remove "v" to improve format, seen in <https://codeberg.org/guix/guix/pulls/3009#issuecomment-7390966>. [source] <uri>: Add "v" to {commit} field. [native-inputs]: Remove labels. Change-Id: I9c2113dbdc265e3726b548670d450d0cdcbf1bea
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1 changed files with 28 additions and 32 deletions
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@ -8691,52 +8691,48 @@ comment or quality sections.")
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(define-public gemma
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(package
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(name "gemma")
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(version "v0.98.5")
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(version "0.98.5")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/genetics-statistics/GEMMA")
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(commit version)))
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(url "https://github.com/genetics-statistics/GEMMA")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1dm8pf1fbdmv2yiz5aybcvk3050m5350gq8xlr4j6swzm3wwhydn"))
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(modules '((guix build utils)))
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(snippet
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'(begin
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(delete-file-recursively "contrib")
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#t))))
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#~(begin
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(delete-file-recursively "contrib")))))
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(build-system gnu-build-system)
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(inputs
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(list gsl openblas zlib))
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(native-inputs
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`(("catch" ,catch2-1)
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("perl" ,perl)
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("shunit2" ,shunit2)
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("which" ,which)))
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(list catch2-1
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perl
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shunit2
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which))
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(delete 'configure)
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(add-after 'unpack 'prepare-build
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(lambda* (#:key inputs #:allow-other-keys)
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(mkdir-p "bin")
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(substitute* "Makefile"
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(("/usr/local/opt/openblas")
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(assoc-ref inputs "openblas")))
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#t))
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(replace 'check
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(lambda* (#:key tests? #:allow-other-keys)
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(when tests?
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;; 'make slow-check' expects shunit2-2.0.3.
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(with-directory-excursion "test"
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(invoke "./test_suite.sh"))
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#t)))
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(replace 'install
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(lambda* (#:key outputs #:allow-other-keys)
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(install-file "bin/gemma"
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(string-append (assoc-ref outputs "out") "/bin"))
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#t)))))
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(list
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#:phases
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#~(modify-phases %standard-phases
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(delete 'configure)
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(add-after 'unpack 'prepare-build
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(lambda _
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(mkdir-p "bin")
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(substitute* "Makefile"
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(("/usr/local/opt/openblas")
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#$(this-package-input "openblas")))))
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(replace 'check
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(lambda* (#:key tests? #:allow-other-keys)
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(when tests?
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;; 'make slow-check' expects shunit2-2.0.3.
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(with-directory-excursion "test"
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(invoke "./test_suite.sh")))))
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(replace 'install
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(lambda _
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(install-file "bin/gemma" (string-append #$output "/bin")))))))
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(home-page "https://github.com/genetics-statistics/GEMMA")
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(synopsis "Tool for genome-wide efficient mixed model association")
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(description
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