gnu: Pin CMake dependency.

* gnu/packages/emulators.scm (python-keystone-engine, unicorn),
* gnu/packages/freedesktop.scm (libdecor),
* gnu/packages/gnome.scm (raider, xffm+),
* gnu/packages/golang-xyz.scm (go-mvdan-cc-editorconfig),
* gnu/packages/hardware.scm (liblxi, lxi-tools),
* gnu/packages/mp3.scm (wavbreaker),
* gnu/packages/pantheon.scm (pantheon-calculator, pantheon-calendar),
* gnu/packages/plotutils.scm (asymptote),
* gnu/packages/photo.scm (entangle),
* gnu/packages/python-graphics.scm (python-pivy),
* gnu/packages/python-xyz.scm (python-awkward-cpp, python-contourpy,
python-symengine),
* gnu/packages/syndication.scm (syndication-domination)
* gnu/packages/qt.scm (soqt),
* gnu/packages/vnc.scm (tigervnc-server)
[native-inputs]: Change cmake to cmake-minimal.

* gnu/packages/bioinformatics.scm (trinityrnaseq)
[native-inputs]: Change cmake to cmake-minimal.
[arguments]<#:phases>[install]: Remove deletion of uncreated files.

Change-Id: I6ce8b737d9a21f83caad7b79b591e68a86f45fd0

gnu/packages/bioinformatics.scm

@@ -7270,8 +7270,6 @@ bases are detected.")
                     (bin   (string-append #$output "/bin/")))
                 (mkdir-p bin)
                 (copy-recursively "." share)
-                (delete-file (string-append share "/Chrysalis/build/CMakeFiles/CMakeOutput.log"))
-                (delete-file (string-append share "/Inchworm/build/CMakeFiles/CMakeOutput.log"))
 
                 (wrap-program (string-append share "Trinity")
                   `("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE")))
@@ -7325,7 +7323,7 @@ bases are detected.")
      (list coreutils
            gzip
            which))
-    (native-inputs (list cmake))
+    (native-inputs (list cmake-minimal))
     (home-page "https://github.com/trinityrnaseq/trinityrnaseq/wiki")
     (synopsis "Trinity RNA-Seq de novo transcriptome assembly")
     (description "Trinity assembles transcript sequences from Illumina RNA-Seq

gnu/packages/emulators.scm

@@ -4136,7 +4136,7 @@ graphic filters.  Some of its features include:
                     (("include\\(cmake/")
                      "include(")))))
     (build-system pyproject-build-system)
-    (native-inputs (list cmake pkg-config python-setuptools python-wheel))
+    (native-inputs (list cmake-minimal pkg-config python-setuptools python-wheel))
     (home-page "https://www.unicorn-engine.org")
     (synopsis "Generic CPU emulator framework")
     (description
@@ -4585,7 +4585,7 @@ stack-machine, written in ANSI C.  Graphical output is implemented using SDL2.")
         (base32 "1xahdr6bh3dw5swrc2r8kqa8ljhqlb7k2kxv5mrw5rhcmcnzcyig"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list cmake
+     (list cmake-minimal
            python-setuptools
            python-wheel))
     (home-page "https://www.keystone-engine.org")

gnu/packages/freedesktop.scm

@@ -3678,7 +3678,7 @@ supporting behavior like @samp{ssh -X}.")
               (base32
                "05rxchwzhnkm91kcr30mavizkp25wgjlhb6lcraa456pw7vgb04q"))))
     (build-system meson-build-system)
-    (native-inputs (list cmake pkg-config))
+    (native-inputs (list cmake-minimal pkg-config))
     (inputs (list cairo
                   dbus
                   egl-wayland

gnu/packages/gnome.scm

@@ -5104,7 +5104,7 @@ from the GSettings schemas in gsettings-desktop-schemas.")
     (native-inputs
      (list gettext-minimal
            pkg-config
-           cmake
+           cmake-minimal
            `(,glib "bin")
            desktop-file-utils
            itstool
@@ -14299,7 +14299,7 @@ historical battery usage and related statistics.")
               ;; This is done so we can override.
               (("`set.PREFIX_BIN") "set(QPREFIX_BIN")))))))
     (native-inputs
-     (list cmake pkg-config intltool gettext-minimal))
+     (list cmake-minimal pkg-config intltool gettext-minimal))
     (inputs
      (list glib gtk+ libx11 libsm libxv libxaw libxcb libxkbfile
            shared-mime-info))

gnu/packages/golang-xyz.scm

@@ -21799,7 +21799,7 @@ recognizers) at run time.")
      (list
       #:import-path "mvdan.cc/editorconfig"))
     (native-inputs
-     (list cmake))
+     (list cmake-minimal))
     (home-page "https://github.com/mvdan/editorconfig")
     (synopsis "EditorConfig support in Go")
     (description

gnu/packages/hardware.scm

@@ -1519,7 +1519,7 @@ confused with the @code{cpuid} command line utility from package @code{cpuid}.")
         (base32 "1cc95ggs64jqq9lk5c8fm4nk6fdnv1x7lr3k4znamj0vv6w22bcd"))))
     (build-system meson-build-system)
     (native-inputs
-     (list cmake pkg-config))
+     (list cmake-minimal pkg-config))
     (inputs
      (list avahi libtirpc libxml2))
     (home-page "https://lxi-tools.github.io/")
@@ -1559,7 +1559,7 @@ your network, send SCPI commands, and receive responses.")
                 (("update-desktop-database") (which "true"))))))))
     (native-inputs
      (list bash-completion
-           cmake
+           cmake-minimal
            (list glib "bin")
            pkg-config
            python

gnu/packages/mp3.scm

@@ -827,7 +827,7 @@ simple to use yet fully featured.")
                  (,(string-append (assoc-ref inputs "gtk+")
                                   "/share/glib-2.0/schemas"))))))))))
     (native-inputs
-     (list pkg-config cmake))
+     (list pkg-config cmake-minimal))
     (inputs
      (list glib
            gtk+

gnu/packages/package-management.scm

@@ -1607,6 +1607,8 @@ tools_locations = {
     (native-inputs
      (list autoconf-wrapper
            automake
+           ;; If cmake is replaced with cmake-minimal then Guix errors when
+           ;; listing the dependents of rapidjson.
            cmake
            git-minimal
            libtool

gnu/packages/pantheon.scm

@@ -127,7 +127,7 @@ in apps built for the Pantheon desktop.")
             libgee
             libhandy))
     (native-inputs
-      (list cmake
+      (list cmake-minimal
             `(,glib "bin") ; for glib-compile-schemas
             gettext-minimal
             pkg-config
@@ -186,7 +186,7 @@ desktop.")
            libical
            libportal))
     (native-inputs
-     (list cmake
+     (list cmake-minimal
            `(,glib "bin") ; for glib-compile-schemas
            gettext-minimal
            pkg-config

gnu/packages/photo.scm

@@ -820,7 +820,7 @@ such as Batch image processing.")
                   `("GI_TYPELIB_PATH" ":" prefix (,gi-typelib-path))
                   `("GUIX_PYTHONPATH" ":" prefix (,python-path)))))))))
     (native-inputs
-     (list cmake
+     (list cmake-minimal
            gettext-minimal
            `(,glib "bin")
            gobject-introspection

gnu/packages/plotutils.scm

@@ -90,7 +90,7 @@
            automake
            bison
            boost
-           cmake
+           cmake-minimal
            emacs-minimal
            flex
            ghostscript                  ;for tests

gnu/packages/python-graphics.scm

@@ -375,7 +375,7 @@ Design spec without sacrificing ease of use or application performance.")
                 (("\\$\\{SoQt_INCLUDE_DIRS}")
                  "${Coin_INCLUDE_DIR};${SoQt_INCLUDE_DIRS}")))))))
     (native-inputs
-      (list cmake swig))
+      (list cmake-minimal swig))
     (inputs
       (list python-wrapper
             qtbase-5

gnu/packages/python-xyz.scm

@@ -459,7 +459,7 @@ compare against a vast section of other version formats.")
                (("^minimum-version =.*") "")))))))
     (propagated-inputs (list python-numpy))
     (native-inputs
-     (list cmake pybind11 python-pytest python-scikit-build-core))
+     (list cmake-minimal pybind11 python-pytest python-scikit-build-core))
     (home-page "https://github.com/scikit-hep/awkward-1.0")
     (synopsis "CPU kernels and compiled extensions for Awkward Array")
     (description "Awkward CPP provides precompiled routines for the awkward

gnu/packages/qt.scm

@@ -5807,7 +5807,7 @@ configurable also via HTTP.")
   (build-system cmake-build-system)
   (arguments '(#:tests? #f)) ; There are no tests
   (native-inputs
-   (list pkg-config cmake))
+   (list pkg-config cmake-minimal))
   (inputs
    (list qtbase-5 coin3d))
   (home-page "https://github.com/coin3d/soqt")

gnu/packages/syndication.scm

@@ -601,7 +601,7 @@ to create RSS feeds for websites that don't provide any.")
                  (base32 "1fl362920n6nz4x9wihyzbr82d9cy60sknhmajj62whd5gs49sbw"))))
       (build-system meson-build-system)
       (inputs (list fmt tidy-html pybind11 python pugixml))
-      (native-inputs (list cmake pkg-config)) ; need cmake to find pybind11
+      (native-inputs (list cmake-minimal pkg-config)) ; need cmake to find pybind11
       (home-page "https://gitlab.com/gabmus/syndication-domination")
       (synopsis "RSS/Atom feed parser")
       (description "This package provides an experimental RSS/Atom feed

gnu/packages/vnc.scm

@@ -372,7 +372,7 @@ used to connect to VNC servers such as the tigervnc-server package.")
                libtool
                gettext-minimal
                font-util
-               cmake
+               cmake-minimal
                perl)))
     (inputs
      (modify-inputs (append (package-inputs xorg-server)