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gnu: r-diffbind: Add missing inputs and skip vignettes.

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* gnu/packages/bioconductor.scm (r-diffbind)[native-inputs]: Add
r-biocstyle and r-xtable.
[properties]: Tell updater to keep r-biocstyle.
[arguments]: Skip building vignettes.

Change-Id: I0a8515301c949c99d890816f37b7da82181b094c
This commit is contained in:
Ricardo Wurmus 2024-11-28 12:52:22 +01:00
parent 3c2964c923
commit 587ec117f4
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GPG key ID: 197A5888235FACAC
1 changed files with 6 additions and 2 deletions
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8
gnu/packages/bioconductor.scm
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@ -14182,8 +14182,12 @@ signal in the input, that lead to spurious peaks during peak calling.")
(sha256
(base32
"1whb4k54wm21k74r6qyng130nnaii9czh9dhvl1x7hnqa8gq0dx7"))))
(properties `((upstream-name . "DiffBind")))
(properties
`((upstream-name . "DiffBind")
(updater-extra-native-inputs . ("r-biocstyle"))))
(build-system r-build-system)
;; Vignettes fail with: "Only one peakset meets specified criteria."
(arguments (list #:test-types '(list "tests")))
(propagated-inputs
(list r-amap
r-apeglm
@ -14208,7 +14212,7 @@ signal in the input, that lead to spurious peaks during peak calling.")
r-s4vectors
r-summarizedexperiment
r-systempiper))
(native-inputs (list r-testthat))
(native-inputs (list r-biocstyle r-testthat r-xtable))
(home-page "https://bioconductor.org/packages/DiffBind")
(synopsis "Differential binding analysis of ChIP-Seq peak data")
(description