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gnu: python-cooler: Use more recent cytoolz.

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* gnu/packages/bioinformatics.scm (python-cooler)[propagated-inputs]: Replace
python-cytoolz-for-cooler with python-cytoolz.
This commit is contained in:
Ricardo Wurmus 2022-05-02 13:33:16 +02:00
parent 9dafaf1635
commit 5caad9f252
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1 changed files with 8 additions and 1 deletions
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gnu/packages/bioinformatics.scm
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@ -12652,6 +12652,13 @@ fasta subsequences.")
(arguments (arguments
`(#:phases `(#:phases
(modify-phases %standard-phases (modify-phases %standard-phases
;; cooler requests cytoolz<0.11. It only uses cytoolz for "compose",
;; which composes two functions.
(add-after 'unpack 'use-recent-cytoolz
(lambda _
(substitute* '("requirements.txt"
"cooler.egg-info/requires.txt")
(("cytoolz.*<.*0.11") "cytoolz"))))
(add-after 'unpack 'patch-tests (add-after 'unpack 'patch-tests
(lambda _ (lambda _
(substitute* "tests/test_create.py" (substitute* "tests/test_create.py"
@ -12677,7 +12684,7 @@ fasta subsequences.")
(list python-asciitree (list python-asciitree
python-biopython python-biopython
python-click python-click
python-cytoolz-for-cooler python-cytoolz
python-dask python-dask
python-h5py python-h5py
python-multiprocess python-multiprocess