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gnu: Add python-goatools.
* gnu/packages/bioinformatics.scm (python-goatools): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
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@ -12337,6 +12337,48 @@ selection of file types and formats for handling genomic region data---all
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using the same syntax.")
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using the same syntax.")
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(license license:expat)))
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(license license:expat)))
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(define-public python-goatools
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(package
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(name "python-goatools")
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(version "1.3.1")
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;; Pypi tarball doesn't include test files.
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/tanghaibao/goatools")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0a295zk9jc8kny5vnka63q3gbksins42kcmgvskf8xy7hkca7cmq"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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;; Almost all tests require access to the internet.
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#:tests? #false
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#:test-flags
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;; These have syntax errors.
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'(list "--ignore=tests/test_i195_sgd_gaf.py"
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"--ignore=tests/test_i206.py"
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"--ignore=tests/test_setup_dirs.py")))
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(propagated-inputs (list python-docopt
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python-numpy
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python-openpyxl
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python-pandas
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python-pydot
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python-requests
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python-scipy
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python-statsmodels
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python-xlsxwriter))
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(native-inputs (list python-pytest))
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(home-page "https://github.com/tanghaibao/goatools")
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(synopsis "Python scripts to find enrichment of GO terms")
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(description "Python scripts to find enrichment of GO terms. In addition,
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this package is used for processing the obo-formatted file from Gene Ontology
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website. The data structure is a directed acyclic graph that allows easy
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traversal from leaf to root.")
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(license license:bsd-2)))
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(define-public python-loompy
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(define-public python-loompy
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(package
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(package
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(name "python-loompy")
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(name "python-loompy")
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