gnu: Add sourcetrail.

* gnu/packages/code.scm: Add sourcetrail. Update imports.
* gnu/packages/patches/sourcetrail-fix-cmakelists-and-paths.patch: Add patch.
* gnu/local.mk: Register it.

Change-Id: Ib074d392452a527552074e5329e8153a858979c9
Reviewed-by: Noé Lopez <noelopez@free.fr>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu/local.mk

@@ -2322,6 +2322,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/snappy-add-O2-flag-in-CmakeLists.txt.patch	\
   %D%/packages/patches/snappy-add-inline-for-GCC.patch		\
   %D%/packages/patches/source-highlight-gcc-compat.patch	\
+  %D%/packages/patches/sourcetrail-fix-cmakelists-and-paths.patch		\
   %D%/packages/patches/softhsm-fix-openssl3-tests.patch		\
   %D%/packages/patches/spectre-meltdown-checker-externalize-fwdb.patch \
   %D%/packages/patches/sphinxbase-fix-doxygen.patch		\

gnu/packages/code.scm

@@ -23,6 +23,7 @@
 ;;; Copyright © 2024 Artyom V. Poptsov <poptsov.artyom@gmail.com>
 ;;; Copyright © 2024 Jordan Moore <lockbox@struct.foo>
 ;;; Copyright © 2025 Nicolas Graves <ngraves@ngraves.fr>
+;;; Copyright © 2025 Ada Stevenson <adanskana@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -88,7 +89,15 @@
   #:use-module (gnu packages texinfo)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages web)
-  #:use-module (gnu packages xml))
+  #:use-module (gnu packages xml)
+  #:use-module (gnu packages boost)
+  #:use-module (gnu packages pretty-print)
+  #:use-module (gnu packages qt)
+  #:use-module (gnu packages regex)
+  #:use-module (gnu packages logging)
+  #:use-module (gnu packages check)
+  #:use-module (gnu packages cpp)
+  #:use-module (srfi srfi-1))
 
 ;;; Tools to deal with source code: metrics, cross-references, etc.
 
@@ -1079,6 +1088,96 @@ also be used for C++ code.
 Using cscope, you can easily search for where symbols are used and defined.")
     (license license:bsd-3)))
 
+(define-public sourcetrail
+  (package
+    (name "sourcetrail")
+    (version "2.0.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/OpenSourceSourceTrail/Sourcetrail")
+             (commit version)
+             (recursive? #t)))
+       (patches (search-patches "sourcetrail-fix-cmakelists-and-paths.patch"))
+       (file-name (git-file-name name version))
+       (sha256
+        "06rp9ba9lkzwm8m7agzajg550h632kqb57bs9srvbgv411bkvgdd")
+       (modules '((guix build utils)))
+       (snippet #~(begin
+                    (for-each delete-file-recursively
+                              '(".conan" ".devcontainer"
+                                ".github"
+                                "conanfile.txt"
+                                "scripts"
+                                "bin/app/data/install"
+                                "bin/app/user/log"))))))
+    (build-system cmake-build-system)
+    (arguments
+     (let* ((split-version (string-split version
+                                         (lambda (c)
+                                           (or (eqv? c #\.)
+                                               (eqv? c #\-)))))
+            (major-version (first split-version))
+            (minor-version (second split-version))
+            (version-patch (third split-version)))
+       (list #:configure-flags #~(list "-DENABLE_UNIT_TEST=true"
+                                       "-DENABLE_GUI_TEST=true"
+                                       "-DENABLE_INTERGRATION_TEST=true"
+                                       (string-append "-DVERSION_MAJOR="
+                                                      #$major-version)
+                                       (string-append "-DVERSION_MINOR="
+                                                      #$minor-version)
+                                       (string-append "-DVERSION_PATCH="
+                                                      #$version-patch)
+                                       "-DLLVM_ENABLE_PROJECTS:STRING=clang"
+                                       "-DLLVM_ENABLE_RTTI:BOOL=ON"
+                                       "-DCLANG_LINK_CLANG_DYLIB:BOOL=ON"
+                                       "-DLLVM_LINK_LLVM_DYLIB:BOOL=ON"
+                                       "-DLLVM_TARGETS_TO_BUILD=host"
+                                       "-DBUILD_CXX_LANGUAGE_PACKAGE=ON"
+                                       (string-append "-DClang_DIR="
+                                                      #$clang-19
+                                                      "/lib/cmake/clang"))
+             #:phases #~(modify-phases %standard-phases
+                          (add-after 'unpack 'fix-paths
+                            (lambda* (#:key inputs #:allow-other-keys)
+                              (substitute* "src/lib_gui/tests/utilityAppTestSuite.cpp"
+                                (("/usr/bin/bash")
+                                 (search-input-file inputs "/bin/bash")))
+                              (substitute* "CMakeLists.txt"
+                                (("@OUTPUT_DIR@")
+                                 #$output))))
+                          (add-after 'install 'install-projects
+                            (lambda _
+                              (let ((src (string-append #$output
+                                          "/share/sourcetrail/user/projects"))
+                                    (dst (string-append #$output:projects
+                                          "/share/sourcetrail/user/projects")))
+                                (copy-recursively src dst)
+                                (delete-file-recursively src))))))))
+    (inputs (list boost
+                  clang-19
+                  expected-lite
+                  qt5compat
+                  qtbase
+                  qtnetworkauth
+                  qtsvg
+                  qtwayland
+                  range-v3
+                  spdlog-1.13
+                  sqlite
+                  tinyxml))
+    (native-inputs (list googletest))
+    (home-page "https://github.com/OpenSourceSourceTrail/Sourcetrail")
+    (synopsis "Graphical cross-platform source code browser for C/C++")
+    (description
+     "Sourcetrail is a free and open-source cross-platform source explorer
+that helps you get productive on unfamiliar source code.  It includes support
+for C/C++, providing a graphical means for discovering symbols and their place
+in a project.")
+    (license license:gpl3)))
+
 (define-public xenon
   (package
     (name "xenon")

gnu/packages/patches/sourcetrail-fix-cmakelists-and-paths.patch

@@ -0,0 +1,101 @@
+Get rid of `clang-tidy.cmake` as it is not present in cmake installation.
+Change SQLite3's `find_package` to `REQUIRED` as the `sqlite3` package does not provide a .cmake file, so we fall back to cmake's included definition.
+We change the install directory to the store output rather than /usr. `@OUTPUT_DIR@` is substituted to the store path in an added phase.
+For the /data and /user directories, we move them to /share/sourcetrail rather than leaving them in the /bin directory.
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index b8b91d9c..d5dbdfa2 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -69,7 +69,6 @@ include(cmake/create_symlink.cmake)
+ include(cmake/add_sourcetrail_library.cmake)
+ include(cmake/add_sourcetrail_interface.cmake)
+ include(cmake/add_sourcetrail_test.cmake)
+-include(cmake/clang-tidy.cmake)
+ include(cmake/cppcheck.cmake)
+ include(cmake/coverage.cmake)
+ #---------------------------------------------------------------------------------------------------------------------------------
+@@ -142,12 +141,9 @@ find_package(expected-lite REQUIRED)
+ find_package(fmt CONFIG REQUIRED)
+ find_package(range-v3 CONFIG REQUIRED)
+ find_package(spdlog CONFIG REQUIRED)
+-find_package(SQLite3 CONFIG REQUIRED)
++find_package(SQLite3 REQUIRED)
+ # Boost --------------------------------------------------------------------------------------------------------------------------
+ set(Boost_USE_MULTITHREAD ON)
+-set(Boost_USE_STATIC_LIBS
+-    ON
+-    CACHE BOOL "Set to ON to force the use of the static libraries.")
+ set(Boost_USE_STATIC_RUNTIME OFF)
+ find_package(
+   Boost 1.83
+@@ -384,14 +380,14 @@ execute_process(COMMAND "${CMAKE_COMMAND}" "-E" "make_directory" "${CMAKE_BINARY
+ create_symlink("${CMAKE_SOURCE_DIR}/bin/app/data" "${CMAKE_BINARY_DIR}/app/data")
+ create_symlink("${CMAKE_SOURCE_DIR}/bin/app/user" "${CMAKE_BINARY_DIR}/app/user")
+ # Install Executables ------------------------------------------------------------------------------------------------------------
+-set(APPIMAGE_ROOT "usr")
++set(APPIMAGE_ROOT "@OUTPUT_DIR@")
+ set(INSTALL_RUNTIME_DIR "${APPIMAGE_ROOT}/bin")
+ 
+ install(TARGETS Sourcetrail Sourcetrail_indexer RUNTIME DESTINATION ${INSTALL_RUNTIME_DIR})
+ 
+-install(DIRECTORY ${CMAKE_SOURCE_DIR}/bin/app/data/ DESTINATION ${INSTALL_RUNTIME_DIR}/data/)
++install(DIRECTORY ${CMAKE_SOURCE_DIR}/bin/app/data/ DESTINATION ${APPIMAGE_ROOT}/share/sourcetrail/data/)
+ 
+-install(DIRECTORY ${CMAKE_SOURCE_DIR}/bin/app/user/ DESTINATION ${INSTALL_RUNTIME_DIR}/user/)
++install(DIRECTORY ${CMAKE_SOURCE_DIR}/bin/app/user/ DESTINATION ${APPIMAGE_ROOT}/share/sourcetrail/user/)
+ 
+ # Install desktop file for application
+ install(FILES "${CMAKE_SOURCE_DIR}/cmake/Sourcetrail.desktop" DESTINATION "${APPIMAGE_ROOT}/share/applications")
+
+We remove the sample projects from the default `ApplicationSettings.xml` as they do not function properly, requiring their installed directory to be mutable,
+which is not possible in the store. They are installed in the `projects` package output.
+
+Submodule bin contains modified content
+diff --git a/bin/app/data/fallback/ApplicationSettings.xml b/bin/app/data/fallback/ApplicationSettings.xml
+index c1d3a78..33cf7d4 100644
+--- a/bin/app/data/fallback/ApplicationSettings.xml
++++ b/bin/app/data/fallback/ApplicationSettings.xml
+@@ -9,10 +9,6 @@
+ 	</indexing>
+ 	<user>
+ 		<recent_projects>
+-			<recent_project>./projects/tutorial/tutorial.srctrlprj</recent_project>
+-			<recent_project>./projects/tictactoe_cpp/tictactoe_cpp.srctrlprj</recent_project>
+-			<recent_project>./projects/tictactoe_py/tictactoe_py.srctrlprj</recent_project>
+-			<recent_project>./projects/javaparser/javaparser.srctrlprj</recent_project>
+ 		</recent_projects>
+ 	</user>
+     <version>8</version>
+diff --git a/bin/app/user/ApplicationSettings.xml b/bin/app/user/ApplicationSettings.xml
+index 7081ab0..755281f 100755
+--- a/bin/app/user/ApplicationSettings.xml
++++ b/bin/app/user/ApplicationSettings.xml
+@@ -22,10 +22,6 @@
+     </indexing>
+     <user>
+         <recent_projects>
+-            <recent_project>C:/Hard/SourceCode/Sourcetrail/build/x64-Debug/Debug/app/user/./projects/tutorial/tutorial.srctrlprj</recent_project>
+-            <recent_project>C:/Hard/SourceCode/Sourcetrail/build/x64-Debug/Debug/app/user/./projects/tictactoe_cpp/tictactoe_cpp.srctrlprj</recent_project>
+-            <recent_project>C:/Hard/SourceCode/Sourcetrail/build/x64-Debug/Debug/app/user/./projects/tictactoe_py/tictactoe_py.srctrlprj</recent_project>
+-            <recent_project>C:/Hard/SourceCode/Sourcetrail/build/x64-Debug/Debug/app/user/./projects/javaparser/javaparser.srctrlprj</recent_project>
+         </recent_projects>
+     </user>
+     <version>8</version>
+
+Set paths to /share/sourcetrail.
+
+diff --git a/src/lib_gui/platform_includes/includesLinux.h b/src/lib_gui/platform_includes/includesLinux.h
+index 79e8be7f..5dadcca5 100644
+--- a/src/lib_gui/platform_includes/includesLinux.h
++++ b/src/lib_gui/platform_includes/includesLinux.h
+@@ -43,6 +43,6 @@ inline void setupApp([[maybe_unused]] int argc, [[maybe_unused]] char* argv[]) {
+   AppPath::setCxxIndexerDirectoryPath(appPath);
+ 
+   // Check if bundled as Linux AppImage
+-  if(appPath.getConcatenated(L"/../share/data").exists()) {
+-    AppPath::setSharedDataDirectoryPath(appPath.getConcatenated(L"/../share").getAbsolute());
++  if(appPath.getConcatenated(L"/../share/sourcetrail/data").exists()) {
++    AppPath::setSharedDataDirectoryPath(appPath.getConcatenated(L"/../share/sourcetrail").getAbsolute());
+   }
+