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gnu: transanno: Update to 0.4.5.
* gnu/packages/bioinformatics.scm (transanno): Update to 0.4.5. [inputs]: Use ‘cargo-inputs’. Add zstd:lib. [arguments]: Remove #:cargo-inputs, #:cargo-development-inputs. * gnu/packages/rust-crates.scm (lookup-cargo-inputs)[transanno]: New entry. Change-Id: I1966f51054151b10cd4514b0c928df007954e5b3
This commit is contained in:
Hilton Chain
parent
9b0916fbfe
commit
64955a0c53
2 changed files with 246 additions and 25 deletions
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@ -7123,18 +7123,17 @@ accurately delineate genomic rearrangements throughout the genome.")
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(define-public transanno
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(package
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(name "transanno")
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(version "0.3.0")
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(version "0.4.5")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/informationsea/transanno")
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;; Corresponds to tag v0.3.0
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(commit "df49050c92644ea12d9d5c6fae2186ca436dbca3")))
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1jpn7s3cnd9ybk4lmfbhj2arhf6cmrv7jp74n7n87m3a3irkaif1"))
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"0x62v8qhnpw8579kcqpr9k5ldv2y3awjp7a32f1j8qky0i1jgxp1"))
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(snippet
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'(with-output-to-file "liftover-rs/build.rs"
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(lambda _
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@ -7157,28 +7156,9 @@ accurately delineate genomic rearrangements throughout the genome.")
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"/bin/bash")))
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(invoke "bash" "prepare-test-files.sh")))
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(add-before 'install 'chdir
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(lambda _ (chdir "transanno"))))
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#:cargo-inputs
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`(("rust-anyhow" ,rust-anyhow-1)
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("rust-autocompress" ,rust-autocompress-0.2)
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("rust-bio" ,rust-bio-0.41)
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("rust-clap" ,rust-clap-2)
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("rust-csv" ,rust-csv-1)
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("rust-flate2" ,rust-flate2-1)
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("rust-indexmap" ,rust-indexmap-1)
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("rust-log" ,rust-log-0.4)
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("rust-nom" ,rust-nom-5)
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("rust-once-cell" ,rust-once-cell-1)
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("rust-pretty-env-logger" ,rust-pretty-env-logger-0.3)
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("rust-regex" ,rust-regex-1)
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("rust-thiserror" ,rust-thiserror-1)
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("rust-serde" ,rust-serde-1)
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("rust-serde-json" ,rust-serde-json-1))
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#:cargo-development-inputs
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`(("rust-clap" ,rust-clap-2)
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("rust-lazy-static" ,rust-lazy-static-1))))
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(lambda _ (chdir "transanno"))))))
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(native-inputs (list bash pkg-config))
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(inputs (list xz))
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(inputs (cons* xz `(,zstd "lib") (cargo-inputs 'transanno)))
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(home-page "https://github.com/informationsea/transanno")
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(synopsis "LiftOver tool for new genome assemblies")
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(description "This package provides an accurate VCF/GFF3/GTF LiftOver tool
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@ -371,6 +371,10 @@
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(crate-source "autocfg" "1.4.0"
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"09lz3by90d2hphbq56znag9v87gfpd9gb8nr82hll8z6x2nhprdc"))
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(define rust-autocompress-0.6.0
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(crate-source "autocompress" "0.6.0"
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"1rjpqvf5if087n1cijcxf5shw9cjv7nyhkxigr0zg9446p8hg2bi"))
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(define rust-automod-1.0.15
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(crate-source "automod" "1.0.15"
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"0w76lzg8vbrvx4cl8x63kdaxkwpbp17c4cg1bcgwmqmj3lqbvd7b"))
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@ -432,6 +436,10 @@
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(crate-source "base64ct" "1.7.3"
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"18scrpjl145msdb64q4nbb0plm4wbmp5lml134nz0c5rvxm5pql9"))
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(define rust-bgzip-0.3.1
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(crate-source "bgzip" "0.3.1"
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"16zr2nclis3kgz0jxi7ayyk510ar5dvyfpf03fazajmn1ycdhkxn"))
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(define rust-bincode-1.3.3
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(crate-source "bincode" "1.3.3"
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"1bfw3mnwzx5g1465kiqllp5n4r10qrqy88kdlp3jfwnq2ya5xx5i"))
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@ -456,6 +464,10 @@
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(crate-source "bio" "0.33.0"
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"1zaghvazh243x2pg866hjx1zwwpp9qzwkf45iz2fs9af5y661gz5"))
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(define rust-bio-1.6.0
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(crate-source "bio" "1.6.0"
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"1hpnfwjyqg23dlk75frydf9kgilccyn3haaw6xdwh25zpa9wnwks"))
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(define rust-bio-types-1.0.4
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(crate-source "bio-types" "1.0.4"
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"0zmdcvj44a088larkahcic5z61cwn2x80iym0w14albzid7zbp7l"))
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@ -600,6 +612,11 @@
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(crate-source "bytesize" "1.3.3"
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"0nb645ma48nwsv1piylzcza0avjp435sl8krhyws3q18kv5ap4rf"))
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(define rust-bzip2-0.4.4
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(crate-source "bzip2" "0.4.4"
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"1y27wgqkx3k2jmh4k26vra2kqjq1qc1asww8hac3cv1zxyk1dcdx"
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#:snippet '(delete-file-recursively "tests")))
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(define rust-bzip2-0.5.2
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(crate-source "bzip2" "0.5.2"
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"0iya6nbj0p2y8jss0z05yncc5hadry164fw3zva01y06v4igpv29"
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@ -1345,6 +1362,10 @@
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(crate-source "ed25519-compact" "2.1.1"
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"1431kxw67xkk5y5kamfdjxnqbzqy5y4p032syi3wva5y8h7ldcz9"))
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(define rust-editdistancek-1.0.2
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(crate-source "editdistancek" "1.0.2"
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"04r6lfq9sfz3wqhqm6fzfcqbj8w16y8bh0x6kzkgkimislixy0iy"))
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(define rust-either-1.15.0
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(crate-source "either" "1.15.0"
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"069p1fknsmzn9llaizh77kip0pqmcwpdsykv2x30xpjyija5gis8"))
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@ -1378,6 +1399,14 @@
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(crate-source "enum-map" "0.6.6"
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"166yh44izfz871f4avl10cp0l161shhsawfcl1q6slv3siamqn93"))
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(define rust-enum-map-2.7.3
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(crate-source "enum-map" "2.7.3"
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"1sgjgl4mmz93jdkfdsmapc3dmaq8gddagw9s0fd501w2vyzz6rk8"))
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(define rust-enum-map-derive-0.17.0
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(crate-source "enum-map-derive" "0.17.0"
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"1sv4mb343rsz4lc3rh7cyn0pdhf7fk18k1dgq8kfn5i5x7gwz0pj"))
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(define rust-enum-map-derive-0.4.6
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(crate-source "enum-map-derive" "0.4.6"
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"0mg43p1x90cz604zddk9qzss077v2id04qmmbpa1i7jc637m1i75"))
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@ -2752,6 +2781,10 @@
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(crate-source "itertools" "0.10.5"
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"0ww45h7nxx5kj6z2y6chlskxd1igvs4j507anr6dzg99x1h25zdh"))
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(define rust-itertools-0.11.0
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(crate-source "itertools" "0.11.0"
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"0mzyqcc59azx9g5cg6fs8k529gvh4463smmka6jvzs3cd2jp7hdi"))
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(define rust-itertools-0.12.1
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(crate-source "itertools" "0.12.1"
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"0s95jbb3ndj1lvfxyq5wanc0fm0r6hg6q4ngb92qlfdxvci10ads"))
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@ -3295,6 +3328,10 @@
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(crate-source "miniz_oxide" "0.8.7"
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"0c4lj692adnzw0h9j8l24d7imds3icpgdkk3b03zlhxf90zcww7z"))
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(define rust-miniz-oxide-0.8.8
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(crate-source "miniz_oxide" "0.8.8"
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"0al9iy33flfgxawj789w2c8xxwg1n2r5vv6m6p5hl2fvd2vlgriv"))
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(define rust-mio-1.0.3
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(crate-source "mio" "1.0.3"
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"1gah0h4ia3avxbwym0b6bi6lr6rpysmj9zvw6zis5yq0z0xq91i8"))
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@ -3311,6 +3348,10 @@
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(crate-source "multimap" "0.8.3"
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"0sicyz4n500vdhgcxn4g8jz97cp1ijir1rnbgph3pmx9ckz4dkp5"))
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(define rust-multimap-0.9.1
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(crate-source "multimap" "0.9.1"
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"04fmnxhpawndrr5x730s3gb4h77ldbrnlww86a8vsb9mkf5x79g1"))
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(define rust-multipart-0.18.0
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(crate-source "multipart" "0.18.0"
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"10libwfbazqcyxcpgpcdf1a66jnzghwlmxlxnffg4rrqhqrwdph0"))
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@ -3328,10 +3369,18 @@
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"0i87k57nav221lnr9z7ljlwxh8073qsx33bajdm146y00q805fqa"
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#:snippet '(delete-file-recursively "tests")))
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(define rust-nalgebra-0.29.0
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(crate-source "nalgebra" "0.29.0"
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"1zri11vkrbk3ayvy8xqcdvvyjvfcbl5a18x8z82racnn11zfn1nm"))
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(define rust-nalgebra-0.32.6
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(crate-source "nalgebra" "0.32.6"
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"1r033ciacblmkif5njlhprfp0k59spjv54cqsyggb1is0bg1fp3v"))
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(define rust-nalgebra-macros-0.1.0
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(crate-source "nalgebra-macros" "0.1.0"
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"063jvvvlwmzzxfr4wyiil2cn1yqj3arvghwsr2nk4ilv2jwc1z01"))
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(define rust-nalgebra-macros-0.2.2
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(crate-source "nalgebra-macros" "0.2.2"
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"1z6v9phhr1hwzyyblf792128lxfv1hy1sxl4cvikihcgmxr56ji5"))
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@ -3352,6 +3401,10 @@
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(crate-source "ndarray" "0.14.0"
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"011wqzmrd9gpfcfvy1xfbskqfiahn96pmi2d0r9x34d682amq3bc"))
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(define rust-ndarray-0.15.6
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(crate-source "ndarray" "0.15.6"
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"0cpsm28hyk8qfjs4g9649dprv3hm53z12qqwyyjqbi3yjr72vcdd"))
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(define rust-ndk-0.9.0
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(crate-source "ndk" "0.9.0"
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"1m32zpmi5w1pf3j47k6k5fw395dc7aj8d0mdpsv53lqkprxjxx63"))
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@ -3676,6 +3729,10 @@
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(crate-source "ordered-float" "2.10.1"
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"075i108hr95pr7hy4fgxivib5pky3b6b22rywya5qyd2wmkrvwb8"))
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(define rust-ordered-float-3.9.2
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(crate-source "ordered-float" "3.9.2"
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"1p3jkxlz89ndm4lmwr2n5kdnckhm5pcmqqkihkag259dff8c7qgi"))
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(define rust-ordered-float-5.0.0
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(crate-source "ordered-float" "5.0.0"
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"009z1k7w729ls2sfg4zknn9v63sk1zghnq54p2lwcjjkdvszkhg2"))
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@ -4036,6 +4093,10 @@
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"0v8iq35ca4rw3rza5is3wjxwsf88303ivys07anc5yviybi31q9s"
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#:snippet '(delete-file-recursively "examples")))
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(define rust-pretty-env-logger-0.5.0
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(crate-source "pretty_env_logger" "0.5.0"
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"076w9dnvcpx6d3mdbkqad8nwnsynb7c8haxmscyrz7g3vga28mw6"))
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(define rust-pretty-hex-0.4.1
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(crate-source "pretty-hex" "0.4.1"
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"0m0j8pqmh6gq1mq7yzp12z0ix159fw0di5lhiwv2y1j0m3j3xj5v"
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@ -4316,6 +4377,10 @@
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(crate-source "rand_distr" "0.2.2"
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"1cpz577qid09lirjjhhn98yqdwsv0c01jf973pxpcr9svp5pm5wn"))
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(define rust-rand-distr-0.4.3
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(crate-source "rand_distr" "0.4.3"
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"0cgfwg3z0pkqhrl0x90c77kx70r6g9z4m6fxq9v0h2ibr2dhpjrj"))
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(define rust-rand-hc-0.2.0
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(crate-source "rand_hc" "0.2.0"
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"0g31sqwpmsirdlwr0svnacr4dbqyz339im4ssl9738cjgfpjjcfa"))
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@ -4931,6 +4996,10 @@
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(crate-source "signature" "2.2.0"
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"1pi9hd5vqfr3q3k49k37z06p7gs5si0in32qia4mmr1dancr6m3p"))
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(define rust-simba-0.6.0
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(crate-source "simba" "0.6.0"
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"0px0nncs3ki86pjcldz40mhvraywh7y9jypfcqqdcihs287q9dzh"))
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(define rust-simba-0.8.1
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(crate-source "simba" "0.8.1"
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"1bnf7ainywmaz2z67ss1q0bjwccf80c50c50r6hlpay69z4hf586"))
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@ -5052,6 +5121,10 @@
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(crate-source "statrs" "0.13.0"
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"0r00b60zlsn6srb6m6bzbw3w5cyihcy4w2rfjav64x4viy5bad0y"))
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(define rust-statrs-0.16.1
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(crate-source "statrs" "0.16.1"
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"08bp7n3rwk41r11ynwl5x7xdc9cv85zw4r7ww117mhfsp8nhcnmk"))
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(define rust-stfu8-0.2.7
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(crate-source "stfu8" "0.2.7"
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"0y0rzzphh2mzfhjz0sxymnjn0s4ap21c74f469s9xycky24iw7z5"))
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@ -5084,6 +5157,10 @@
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(crate-source "strum" "0.24.1"
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"0gz6cjhlps5idwasznklxdh2zsas6mxf99vr0n27j876q12n0gh6"))
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(define rust-strum-0.25.0
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(crate-source "strum" "0.25.0"
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"09g1q55ms8vax1z0mxlbva3vm8n2r1179kfvbccnkjcidzm58399"))
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(define rust-strum-0.26.3
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(crate-source "strum" "0.26.3"
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"01lgl6jvrf4j28v5kmx9bp480ygf1nhvac8b4p7rcj9hxw50zv4g"))
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@ -5096,6 +5173,10 @@
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(crate-source "strum_macros" "0.24.3"
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"0naxz2y38kwq5wgirmia64vvf6qhwy8j367rw966n62gsbh5nf0y"))
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(define rust-strum-macros-0.25.3
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(crate-source "strum_macros" "0.25.3"
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"184y62g474zqb2f7n16x3ghvlyjbh50viw32p9w9l5lwmjlizp13"))
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(define rust-strum-macros-0.26.4
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(crate-source "strum_macros" "0.26.4"
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"1gl1wmq24b8md527cpyd5bw9rkbqldd7k1h38kf5ajd2ln2ywssc"))
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@ -5508,6 +5589,10 @@
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(crate-source "triple_accel" "0.3.4"
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"0v795l496crk3h6yff9zh1cjyrh5s9v23fbgccc4dpz25z70jav2"))
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(define rust-triple-accel-0.4.0
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(crate-source "triple_accel" "0.4.0"
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"0qqyhl1pdvmfbx9fgw5jc15j42d0j1i7b6pzn42zsbzvbp4qn112"))
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(define rust-try-lock-0.2.5
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(crate-source "try-lock" "0.2.5"
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"0jqijrrvm1pyq34zn1jmy2vihd4jcrjlvsh4alkjahhssjnsn8g4"))
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@ -10970,6 +11055,162 @@
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rust-zune-core-0.4.12
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rust-zune-inflate-0.2.54
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rust-zune-jpeg-0.4.14))
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(transanno =>
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(list rust-addr2line-0.24.2
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rust-adler2-2.0.0
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rust-aho-corasick-1.1.3
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rust-anstream-0.6.18
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rust-anstyle-1.0.10
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rust-anstyle-parse-0.2.6
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rust-anstyle-query-1.1.2
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rust-anstyle-wincon-3.0.7
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rust-anyhow-1.0.97
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rust-approx-0.5.1
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rust-autocfg-1.4.0
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rust-autocompress-0.6.0
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rust-backtrace-0.3.74
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rust-bgzip-0.3.1
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rust-bio-1.6.0
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rust-bio-types-1.0.4
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rust-bit-set-0.5.3
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rust-bit-vec-0.6.3
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rust-bitflags-2.9.0
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rust-bv-0.11.1
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rust-bytecount-0.6.8
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rust-bytemuck-1.22.0
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rust-byteorder-1.5.0
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rust-bytes-1.10.1
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rust-bzip2-0.4.4
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rust-bzip2-sys-0.1.13+1.0.8
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rust-cc-1.2.18
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rust-cfg-if-1.0.0
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rust-clap-4.5.35
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rust-clap-builder-4.5.35
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rust-clap-derive-4.5.32
|
||||
rust-clap-lex-0.7.4
|
||||
rust-colorchoice-1.0.3
|
||||
rust-crc32fast-1.4.2
|
||||
rust-crossbeam-deque-0.8.6
|
||||
rust-crossbeam-epoch-0.9.18
|
||||
rust-crossbeam-utils-0.8.21
|
||||
rust-csv-1.3.1
|
||||
rust-csv-core-0.1.12
|
||||
rust-custom-derive-0.1.7
|
||||
rust-derive-new-0.6.0
|
||||
rust-editdistancek-1.0.2
|
||||
rust-either-1.15.0
|
||||
rust-enum-map-2.7.3
|
||||
rust-enum-map-derive-0.17.0
|
||||
rust-env-logger-0.10.2
|
||||
rust-equivalent-1.0.2
|
||||
rust-feature-probe-0.1.1
|
||||
rust-fixedbitset-0.4.2
|
||||
rust-flate2-1.1.1
|
||||
rust-fxhash-0.2.1
|
||||
rust-getrandom-0.2.15
|
||||
rust-getrandom-0.3.2
|
||||
rust-gimli-0.31.1
|
||||
rust-hashbrown-0.15.2
|
||||
rust-heck-0.4.1
|
||||
rust-heck-0.5.0
|
||||
rust-hermit-abi-0.5.0
|
||||
rust-humantime-2.2.0
|
||||
rust-indexmap-2.9.0
|
||||
rust-is-terminal-0.4.16
|
||||
rust-is-terminal-polyfill-1.70.1
|
||||
rust-itertools-0.11.0
|
||||
rust-itertools-num-0.1.3
|
||||
rust-itoa-1.0.15
|
||||
rust-jobserver-0.1.33
|
||||
rust-lazy-static-1.5.0
|
||||
rust-libc-0.2.171
|
||||
rust-libm-0.2.11
|
||||
rust-log-0.4.27
|
||||
rust-lzma-sys-0.1.20
|
||||
rust-matrixmultiply-0.3.9
|
||||
rust-memchr-2.7.4
|
||||
rust-minimal-lexical-0.2.1
|
||||
rust-miniz-oxide-0.8.8
|
||||
rust-multimap-0.9.1
|
||||
rust-nalgebra-0.29.0
|
||||
rust-nalgebra-macros-0.1.0
|
||||
rust-ndarray-0.15.6
|
||||
rust-newtype-derive-0.1.6
|
||||
rust-nom-7.1.3
|
||||
rust-num-complex-0.4.6
|
||||
rust-num-integer-0.1.46
|
||||
rust-num-rational-0.4.2
|
||||
rust-num-traits-0.2.19
|
||||
rust-object-0.36.7
|
||||
rust-once-cell-1.21.3
|
||||
rust-ordered-float-3.9.2
|
||||
rust-paste-1.0.15
|
||||
rust-petgraph-0.6.5
|
||||
rust-pin-project-lite-0.2.16
|
||||
rust-pkg-config-0.3.32
|
||||
rust-ppv-lite86-0.2.21
|
||||
rust-pretty-env-logger-0.5.0
|
||||
rust-proc-macro2-1.0.94
|
||||
rust-quote-1.0.40
|
||||
rust-r-efi-5.2.0
|
||||
rust-rand-0.8.5
|
||||
rust-rand-chacha-0.3.1
|
||||
rust-rand-core-0.6.4
|
||||
rust-rand-distr-0.4.3
|
||||
rust-rawpointer-0.2.1
|
||||
rust-rayon-1.10.0
|
||||
rust-rayon-core-1.12.1
|
||||
rust-regex-1.11.1
|
||||
rust-regex-automata-0.4.9
|
||||
rust-regex-syntax-0.8.5
|
||||
rust-rustc-demangle-0.1.24
|
||||
rust-rustc-version-0.1.7
|
||||
rust-rustversion-1.0.20
|
||||
rust-ryu-1.0.20
|
||||
rust-safe-arch-0.7.4
|
||||
rust-semver-0.1.20
|
||||
rust-serde-1.0.219
|
||||
rust-serde-derive-1.0.219
|
||||
rust-serde-json-1.0.140
|
||||
rust-shlex-1.3.0
|
||||
rust-simba-0.6.0
|
||||
rust-statrs-0.16.1
|
||||
rust-strsim-0.11.1
|
||||
rust-strum-0.25.0
|
||||
rust-strum-macros-0.25.3
|
||||
rust-strum-macros-0.26.4
|
||||
rust-syn-1.0.109
|
||||
rust-syn-2.0.100
|
||||
rust-termcolor-1.4.1
|
||||
rust-thiserror-1.0.69
|
||||
rust-thiserror-impl-1.0.69
|
||||
rust-tokio-1.44.2
|
||||
rust-triple-accel-0.4.0
|
||||
rust-typenum-1.18.0
|
||||
rust-unicode-ident-1.0.18
|
||||
rust-utf8parse-0.2.2
|
||||
rust-vec-map-0.8.2
|
||||
rust-wasi-0.11.0+wasi-snapshot-preview1
|
||||
rust-wasi-0.14.2+wasi-0.2.4
|
||||
rust-wide-0.7.32
|
||||
rust-winapi-util-0.1.9
|
||||
rust-windows-sys-0.59.0
|
||||
rust-windows-targets-0.52.6
|
||||
rust-windows-aarch64-gnullvm-0.52.6
|
||||
rust-windows-aarch64-msvc-0.52.6
|
||||
rust-windows-i686-gnu-0.52.6
|
||||
rust-windows-i686-gnullvm-0.52.6
|
||||
rust-windows-i686-msvc-0.52.6
|
||||
rust-windows-x86-64-gnu-0.52.6
|
||||
rust-windows-x86-64-gnullvm-0.52.6
|
||||
rust-windows-x86-64-msvc-0.52.6
|
||||
rust-wit-bindgen-rt-0.39.0
|
||||
rust-xz2-0.1.7
|
||||
rust-zerocopy-0.8.24
|
||||
rust-zerocopy-derive-0.8.24
|
||||
rust-zstd-0.13.3
|
||||
rust-zstd-safe-7.2.4
|
||||
rust-zstd-sys-2.0.15+zstd.1.5.7))
|
||||
(uv =>
|
||||
(list rust-addr2line-0.24.2
|
||||
rust-adler2-2.0.0
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue