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Merge remote-tracking branch 'origin/master' into staging

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Efraim Flashner 2022-06-01 12:31:09 +03:00
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224
gnu/packages/databases.scm
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@ -102,6 +102,7 @@
#:use-module (gnu packages gnome)
#:use-module (gnu packages gnupg)
#:use-module (gnu packages golang)
#:use-module (gnu packages gperf)
#:use-module (gnu packages gtk)
#:use-module (gnu packages guile)
#:use-module (gnu packages icu4c)
@ -178,47 +179,6 @@
#:use-module (srfi srfi-26)
#:use-module (ice-9 match))
(define-public 4store
(package
(name "4store")
(version "1.1.6")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/4store/4store")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "1kzdfmwpzy64cgqlkcz5v4klwx99w0jk7afckyf7yqbqb4rydmpk"))
(patches (search-patches "4store-unset-preprocessor-directive.patch"
"4store-fix-buildsystem.patch"))))
(build-system gnu-build-system)
(native-inputs
(list perl
python-2
autoconf
automake
gettext-minimal
libtool
`(,pcre "bin") ;for 'pcre-config'
pkg-config))
(inputs
(list glib
rasqal
libxml2
raptor2
readline
avahi
cyrus-sasl
openssl
`(,util-linux "lib")))
;; http://www.4store.org has been down for a while now.
(home-page "https://github.com/4store/4store")
(synopsis "Clustered RDF storage and query engine")
(description "4store is a RDF/SPARQL store written in C, supporting
either single machines or networked clusters.")
(license license:gpl3+)))
(define-public ephemeralpg
(package
(name "ephemeralpg")
@ -1511,9 +1471,6 @@ CSV, DB3, iXF, SQLite, MS-SQL or MySQL to PostgreSQL.")
Most public APIs are compatible with @command{mysqlclient} and MySQLdb.")
(license license:expat)))
(define-public python2-pymysql
(package-with-python2 python-pymysql))
(define-public qdbm
(package
(name "qdbm")
@ -2776,29 +2733,20 @@ semantics.")
(define-public libpqxx
(package
(name "libpqxx")
(version "4.0.1")
(version "7.7.3")
(source (origin
(method url-fetch)
(uri (string-append
"http://pqxx.org/download/software/libpqxx/"
name "-" version ".tar.gz"))
(method git-fetch)
(uri (git-reference
(url "https://github.com/jtv/libpqxx")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32
"0f6wxspp6rx12fkasanb0z2g2gc8dhcfwnxagx8wwqbpg6ifsz09"))))
"1mrhsih5bhiin0l3c4vp22l9p7c5035m0vvqpx18c0407fkzc7hp"))))
(build-system gnu-build-system)
(native-inputs
`(("python" ,python-2)))
(native-inputs (list gcc-11 python-wrapper))
(inputs (list postgresql))
(arguments
`(#:tests? #f ; # FAIL: 1
#:phases
(modify-phases %standard-phases
(add-before 'configure 'fix-sed-command
(lambda _
;; Newer sed versions error out if double brackets are not used.
(substitute* "configure"
(("\\[:space:\\]") "[[:space:]]"))
#t)))))
(arguments '(#:tests? #f)) ;tests require a running PostgreSQL server
(synopsis "C++ connector for PostgreSQL")
(description
"Libpqxx is a C++ library to enable user programs to communicate with the
@ -2862,9 +2810,6 @@ support for sqlite, mysql and postgresql. If you already have a database, you
can autogenerate peewee models using @code{pwiz}, a model generator.")
(license license:expat)))
(define-public python2-peewee
(package-with-python2 python-peewee))
(define-public python-pypika-tortoise
(package
(name "python-pypika-tortoise")
@ -3080,9 +3025,6 @@ development.")
for ODBC.")
(license (license:x11-style "file://LICENSE.TXT"))))
(define-public python2-pyodbc-c
(package-with-python2 python-pyodbc-c))
(define-public python-pyodbc
(package
(name "python-pyodbc")
@ -3105,9 +3047,6 @@ for ODBC.")
for ODBC.")
(license (license:x11-style "file:///LICENSE.TXT"))))
(define-public python2-pyodbc
(package-with-python2 python-pyodbc))
(define-public mdbtools
(package
(name "mdbtools")
@ -3215,14 +3154,30 @@ Memory-Mapped Database} (LMDB), a high-performance key-value store.")
(define-public virtuoso-ose
(package
(name "virtuoso-ose")
(version "7.2.6")
(version "7.2.7")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/virtuoso/virtuoso/" version "/"
"virtuoso-opensource-" version ".tar.gz"))
(sha256
(base32 "0ly7s7a3w2a2zhhi9rq9k2qlnzapqbbc1rcdqb3zqqpgg81krz9q"))))
(base32 "1853ln0smiilf3pni70gq6nmi9ps039cy44g6b5i9d2z1n9hnj02"))
(patches (search-patches "virtuoso-ose-remove-pre-built-jar-files.patch"))
(modules '((guix build utils)))
;; This snippet removes pre-built Java archives.
(snippet
'(for-each delete-file-recursively
(list "binsrc/hibernate"
"binsrc/jena"
"binsrc/jena2"
"binsrc/jena3"
"binsrc/jena4"
"binsrc/rdf4j"
"binsrc/sesame"
"binsrc/sesame2"
"binsrc/sesame3"
"binsrc/sesame4"
"libsrc/JDBCDriverType4")))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; Tests require a network connection.
@ -3233,6 +3188,9 @@ Memory-Mapped Database} (LMDB), a high-performance key-value store.")
"--enable-static=no")
#:phases
(modify-phases %standard-phases
(replace 'bootstrap
(lambda _
(invoke "sh" "autogen.sh")))
;; Even with "--enable-static=no", "libvirtuoso-t.a" is left in
;; the build output. The following phase removes it.
(add-after 'install 'remove-static-libs
@ -3242,6 +3200,8 @@ Memory-Mapped Database} (LMDB), a high-performance key-value store.")
(delete-file (string-append lib "/" file)))
'("libvirtuoso-t.a"
"libvirtuoso-t.la"))))))))
(native-inputs
(list autoconf automake bison flex gperf libtool))
(inputs
(list openssl net-tools readline zlib))
(home-page "http://vos.openlinksw.com/owiki/wiki/VOS/")
@ -3278,33 +3238,6 @@ local Cassandra clusters. It creates, launches and removes Cassandra clusters
on localhost.")
(license license:asl2.0)))
(define-public python2-ccm
(package-with-python2 python-ccm))
(define-public python2-pysqlite
(package
(name "python2-pysqlite")
(version "2.8.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pysqlite" version))
(sha256
(base32
"1424gwq9sil2ffmnizk60q36vydkv8rxs6m7xs987kz8cdc37lqp"))))
(build-system python-build-system)
(inputs
(list sqlite))
(arguments
`(#:python ,python-2 ; incompatible with Python 3
#:tests? #f)) ; no test target
(home-page "https://github.com/ghaering/pysqlite")
(synopsis "SQLite bindings for Python")
(description
"Pysqlite provides SQLite bindings for Python that comply to the
Database API 2.0T.")
(license license:zlib)))
(define-public python-sqlalchemy
(package
(name "python-sqlalchemy")
@ -3343,30 +3276,6 @@ designed for efficient and high-performing database access, adapted into a
simple and Pythonic domain language.")
(license license:x11)))
(define-public python2-sqlalchemy
(let ((base (package-with-python2 python-sqlalchemy)))
(package
(inherit base)
(arguments
(substitute-keyword-arguments (package-arguments base)
((#:phases phases)
#~(modify-phases #$phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(invoke "pytest" "-vv"
;; The memory usage tests are very expensive and run in
;; sequence; skip them.
"-k"
(string-append
"not test_memusage.py"
;; This test fails with "AssertionError: Warnings
;; were not seen [...]".
" and not test_fixture_five")))))))))
;; Do not use pytest-xdist, which is broken for Python 2.
(native-inputs (modify-inputs (package-native-inputs base)
(delete "python-pytest-xdist"))))))
(define-public python-sqlalchemy-stubs
(package
(name "python-sqlalchemy-stubs")
@ -3525,17 +3434,8 @@ value in database is immediately visible to other processes accessing the same
database. Concurrency is possible because the values are stored in separate
files. Hence the “database” is a directory where all files are governed by
PickleShare.")
(properties `((python2-variant . ,(delay python2-pickleshare))))
(license license:expat)))
(define-public python2-pickleshare
(let ((pickleshare (package-with-python2
(strip-python2-variant python-pickleshare))))
(package (inherit pickleshare)
(propagated-inputs (modify-inputs (package-propagated-inputs
pickleshare)
(prepend python2-pathlib2))))))
(define-public python-apsw
(package
(name "python-apsw")
@ -3579,9 +3479,6 @@ pysqlite it focuses on being a minimal layer over SQLite attempting just to
translate the complete SQLite API into Python.")
(license license:zlib)))
(define-public python2-apsw
(package-with-python2 python-apsw))
(define-public python-aiosqlite
(package
(name "python-aiosqlite")
@ -3638,48 +3535,6 @@ managers for automatically closing connections.")
(description "This package implements async database support for Python.")
(license license:bsd-3)))
(define-public python2-neo4j-driver
(package
(name "python2-neo4j-driver")
;; NOTE: When upgrading to 1.5.0, please add a python3 variant.
(version "1.4.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "neo4j-driver" version))
(sha256
(base32
"011r1vh182p8mm83d8dz9rfnc3l7rf7fd00cyrbyfzi71jmc4g98"))))
(build-system python-build-system)
(arguments
`(#:python ,python-2))
(home-page "https://neo4j.com/developer/python/")
(synopsis "Neo4j driver code written in Python")
(description "This package provides the Neo4j Python driver that connects
to the database using Neo4j's binary protocol. It aims to be minimal, while
being idiomatic to Python.")
(license license:asl2.0)))
(define-public python2-py2neo
(package
(name "python2-py2neo")
(version "3.1.2")
(source (origin
(method url-fetch)
(uri (pypi-uri "py2neo" version))
(sha256
(base32
"1f1q95vqcvlc3nsc33p841swnjdcjazddlq2dzi3qfnjqjrajxw1"))))
(build-system python-build-system)
(arguments
`(#:python ,python-2))
(home-page "https://py2neo.org")
(synopsis "Library and toolkit for working with Neo4j in Python")
(description "This package provides a client library and toolkit for
working with Neo4j from within Python applications and from the command
line. The core library has no external dependencies and has been carefully
designed to be easy and intuitive to use.")
(license license:asl2.0)))
(define-public python-psycopg2
(package
(name "python-psycopg2")
@ -3916,9 +3771,6 @@ for Python. The design goals are:
parsing code in hiredis. It primarily speeds up parsing of multi bulk replies.")
(license license:bsd-3)))
(define-public python2-hiredis
(package-with-python2 python-hiredis))
(define-public python-aioredis
(package
(name "python-aioredis")
@ -4005,9 +3857,6 @@ reasonable substitute.")
"This package provides a Python interface to the Redis key-value store.")
(license license:expat)))
(define-public python2-redis
(package-with-python2 python-redis))
(define-public python-rq
(package
(name "python-rq")
@ -4105,9 +3954,6 @@ is designed to have a low barrier to entry.")
Redis protocol.")
(license license:bsd-2)))
(define-public python2-trollius-redis
(package-with-python2 python-trollius-redis))
(define-public python-sqlparse
(package
(name "python-sqlparse")
@ -4193,7 +4039,7 @@ the SQL language using a syntax that reflects the resulting query.")
(define-public apache-arrow
(package
(name "apache-arrow")
(version "7.0.0")
(version "8.0.0")
(source
(origin
(method git-fetch)
@ -4203,7 +4049,7 @@ the SQL language using a syntax that reflects the resulting query.")
(file-name (git-file-name name version))
(sha256
(base32
"19xx6mlddca79q6d3wga574m4y32ixmxx2rmk6j3f22i5c37mjzw"))))
"1gwiflk72pq1krc0sjzabypmh7slfyf7ak71fiypy3xgzw8a777c"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f