diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 90d7b70c9a8..1b82a6bed7e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -17276,40 +17276,6 @@ tasks on single cell expression data. It is designed to work with RNA-Seq and qPCR data, but could be used with other types as well.") (license license:artistic2.0))) -(define-public r-leidenbase - (let ((commit "a11b8455fa3307d9e3ac4e3a5accddf3c83b9a96") - (revision "1")) - (package - (name "r-leidenbase") - (version (git-version "0.1.9" revision commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/cole-trapnell-lab/leidenbase") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1f54mycsffvzmblz5pzgs3v4jygnbvz0c9d3x710gw5mxkq2p84f")))) - (properties `((upstream-name . "leidenbase"))) - (build-system r-build-system) - (inputs - (list zlib)) - (native-inputs - (list gfortran r-knitr r-testthat)) - (propagated-inputs - (list r-igraph)) - (home-page "https://github.com/cole-trapnell-lab/leidenbase") - (synopsis "R and C wrappers to run the Leiden find_partition function") - (description - "This package provides an R to C interface that runs the Leiden -community detection algorithm to find a basic partition. It runs the -equivalent of the @code{find_partition} function. This package includes the -required source code files from the official Leidenalg distribution and -several functions from the R igraph package.") - (license license:gpl3+)))) - (define-public r-sangerseqr (package (name "r-sangerseqr")