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gnu: python-gpy: Update to 1.13.2.

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* gnu/packages/python-science.scm (python-gpy): Update to
1.13.2. Fix build and refresh package style.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I446821dace8cc9c99543f0940e400ca4fc081b08
This commit is contained in:
Sharlatan Hellseher 2025-03-22 22:34:46 +00:00
parent aaf4bf1491
commit 6ac3bc012f
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GPG key ID: 76D727BFF62CD2B5
1 changed files with 31 additions and 23 deletions
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54
gnu/packages/python-science.scm
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@ -3754,35 +3754,43 @@ for parameterized model creation and handling. Its features include:
(define-public python-gpy
(package
(name "python-gpy")
(version "1.13.1")
(source (origin
(method url-fetch)
(uri (pypi-uri "GPy" version))
(sha256
(base32
"05d1ry4jpp0srsrmp3qd6s0p2bjc4c0z99450pzdr79vagbfvlk4"))))
(version "1.13.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "GPy" version))
(sha256
(base32 "083rl8nr4nmmr1pzn0g8gsc4wi9dnhj3jjhkwsssadm5vns5d0m3"))))
(build-system pyproject-build-system)
(arguments
(list
#:phases
'(modify-phases %standard-phases
(add-after 'unpack 'compatibility
(lambda _
;; This file uses Python 2 statements
(delete-file "GPy/testing/mpi_test__.py")
(substitute* "setup.py"
(("scipy>=1.3.0,<1.12.0")
"scipy>=1.3.0,<=1.13.0"))
;; Use numpy.exp because scipy.ext no longer exists
(substitute* "GPy/kern/src/sde_standard_periodic.py"
(("sp\\.exp") "np.exp"))
(substitute* "GPy/kern/src/sde_stationary.py"
(("sp\\.poly1d") "np.poly1d")
(("sp\\.roots") "np.roots")))))))
#~(modify-phases %standard-phases
(add-after 'unpack 'compatibility
(lambda _
;; This file uses Python 2 statements
(delete-file "GPy/testing/mpi_test__.py")
(substitute* "setup.py"
(("scipy>=1.3.0,<1.12.0")
"scipy>=1.3.0,<=1.13.0"))
;; Use numpy.exp because scipy.ext no longer exists
(substitute* "GPy/kern/src/sde_standard_periodic.py"
(("sp\\.exp") "np.exp"))
(substitute* "GPy/kern/src/sde_stationary.py"
(("sp\\.poly1d") "np.poly1d")
(("sp\\.roots") "np.roots")))))))
(native-inputs
(list python-cython python-matplotlib python-pods python-pytest))
(list python-cython
python-matplotlib
python-pods
python-pytest
python-setuptools
python-wheel))
(propagated-inputs
(list python-numpy python-paramz python-scipy python-six))
(list python-numpy
python-paramz
python-scipy
python-six))
(home-page "https://sheffieldml.github.io/GPy/")
(synopsis "The Gaussian Process Toolbox")
(description