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gnu: mafft: Add bash-minimal to inputs.

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* gnu/packages/bioinformatics.scm (mafft): Delete trailing #t.
[inputs]: Add bash-minimal.

Change-Id: Id30d22dc37ee57591f17dc116de81500b09adf3c
This commit is contained in:
Maxim Cournoyer 2023-10-20 01:05:23 -04:00 • committed by Ludovic Courtès
parent bff03561c4
commit 6bcc2f6571
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GPG key ID: 090B11993D9AEBB5
1 changed files with 3 additions and 5 deletions
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gnu/packages/bioinformatics.scm
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@ -8810,8 +8810,7 @@ selection, etc.).")
(("^rm -f mafft-distance mafft-distance.exe") ")#") (("^rm -f mafft-distance mafft-distance.exe") ")#")
;; do not install MAN pages in libexec folder ;; do not install MAN pages in libexec folder
(("^\t\\$\\(INSTALL\\) -m 644 \\$\\(MANPAGES\\) \ (("^\t\\$\\(INSTALL\\) -m 644 \\$\\(MANPAGES\\) \
\\$\\(DESTDIR\\)\\$\\(LIBDIR\\)") "#")) \\$\\(DESTDIR\\)\\$\\(LIBDIR\\)") "#"))))
#t))
(add-after 'enter-dir 'patch-paths (add-after 'enter-dir 'patch-paths
(lambda* (#:key inputs #:allow-other-keys) (lambda* (#:key inputs #:allow-other-keys)
(substitute* '("pairash.c" (substitute* '("pairash.c"
@ -8819,8 +8818,7 @@ selection, etc.).")
(("perl") (which "perl")) (("perl") (which "perl"))
(("([\"`| ])awk" _ prefix) (("([\"`| ])awk" _ prefix)
(string-append prefix (which "awk"))) (string-append prefix (which "awk")))
(("grep") (which "grep"))) (("grep") (which "grep")))))
#t))
(delete 'configure) (delete 'configure)
(add-after 'install 'wrap-programs (add-after 'install 'wrap-programs
(lambda* (#:key inputs outputs #:allow-other-keys) (lambda* (#:key inputs outputs #:allow-other-keys)
@ -8833,7 +8831,7 @@ selection, etc.).")
`("PATH" ":" prefix (,path)))) `("PATH" ":" prefix (,path))))
(find-files bin)))))))) (find-files bin))))))))
(inputs (inputs
(list perl ruby gawk grep coreutils)) (list bash-minimal perl ruby gawk grep coreutils))
(home-page "https://mafft.cbrc.jp/alignment/software/") (home-page "https://mafft.cbrc.jp/alignment/software/")
(synopsis "Multiple sequence alignment program") (synopsis "Multiple sequence alignment program")
(description (description