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gnu: python-decoupler-py: Update to 1.8.0.

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* gnu/packages/bioinformatics.scm (python-decoupler-py): Update to 1.8.0.
[arguments] <phases>: Add 'relax-requirements.
[native-inputs]: Remove python-wheel; add python-poetry-core.

Change-Id: I6ef7548dcbe90c87e049fef12402bcc58f807ce4
This commit is contained in:
Sharlatan Hellseher 2025-04-05 16:04:24 +01:00 • committed by Andreas Enge
parent 400b431b03
commit 6cd3a6595f
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1 changed files with 11 additions and 4 deletions
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@ -2796,16 +2796,18 @@ parsing of Variant Call Format (VCF) files.")
(define-public python-decoupler-py (define-public python-decoupler-py
(package (package
(name "python-decoupler-py") (name "python-decoupler-py")
(version "1.6.0") ;; Upstream places release on a new branch, see
;; <https://github.com/saezlab/decoupler-py/issues/175>.
(version "1.8.0")
(source (origin (source (origin
(method git-fetch) (method git-fetch)
(uri (git-reference (uri (git-reference
(url "https://github.com/saezlab/decoupler-py") (url "https://github.com/saezlab/decoupler-py")
(commit (string-append "v" version)))) (commit version)))
(file-name (git-file-name name version)) (file-name (git-file-name name version))
(sha256 (sha256
(base32 (base32
"1mqkp0i8k5hzhfnka4nc2f0phmrs0k404ynbl1lqfjzywx25y75h")))) "0c3yg7jjb1nxb6hsh9wn7wr8w0ba55gixdbf5fp443nhv1cwlajj"))))
(build-system pyproject-build-system) (build-system pyproject-build-system)
(arguments (arguments
(list (list
@ -2821,6 +2823,11 @@ parsing of Variant Call Format (VCF) files.")
" and not test_get_collectri")) " and not test_get_collectri"))
#:phases #:phases
'(modify-phases %standard-phases '(modify-phases %standard-phases
(add-after 'unpack 'relax-requirements
(lambda _
(substitute* "pyproject.toml"
;; numba = "^0.60.0"; all tests passed.
(("0.60.0") "0.61.0"))))
(add-before 'check 'set-home (add-before 'check 'set-home
;; Some tests require a home directory to be set. ;; Some tests require a home directory to be set.
(lambda _ (setenv "HOME" "/tmp"))) (lambda _ (setenv "HOME" "/tmp")))
@ -2842,7 +2849,7 @@ parsing of Variant Call Format (VCF) files.")
python-skranger python-skranger
python-tqdm python-tqdm
python-typing-extensions)) python-typing-extensions))
(native-inputs (list python-pytest python-wheel)) (native-inputs (list python-poetry-core python-pytest))
(home-page "https://github.com/saezlab/decoupler-py") (home-page "https://github.com/saezlab/decoupler-py")
(synopsis (synopsis
"Framework for modeling, analyzing and interpreting single-cell RNA-seq data") "Framework for modeling, analyzing and interpreting single-cell RNA-seq data")