mirror of
https://codeberg.org/guix/guix.git
synced 2025-10-02 02:15:12 +00:00
Merge branch 'master' into staging
This commit is contained in:
Ludovic Courtès
commit
7097e98586
180 changed files with 7908 additions and 3336 deletions
|
|
@ -31,7 +31,7 @@
|
|||
;;; Copyright © 2016, 2017, 2019 Alex Vong <alexvong1995@gmail.com>
|
||||
;;; Copyright © 2016, 2017, 2018, 2021 Arun Isaac <arunisaac@systemreboot.net>
|
||||
;;; Copyright © 2016, 2017, 2018, 2020, 2021 Julien Lepiller <julien@lepiller.eu>
|
||||
;;; Copyright © 2016–2021 Tobias Geerinckx-Rice <me@tobias.gr>
|
||||
;;; Copyright © 2016–2022 Tobias Geerinckx-Rice <me@tobias.gr>
|
||||
;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be>
|
||||
;;; Copyright © 2017 Carlo Zancanaro <carlo@zancanaro.id.au>
|
||||
;;; Copyright © 2017 Frederick M. Muriithi <fredmanglis@gmail.com>
|
||||
|
|
@ -121,6 +121,8 @@
|
|||
;;; Copyright © 2022 Peter Polidoro <peter@polidoro.io>
|
||||
;;; Copyright © 2022 Wamm K. D. <jaft.r@outlook.com>
|
||||
;;; Copyright © 2022 Jai Vetrivelan <jaivetrivelan@gmail.com>
|
||||
;;; Copyright © 2022 Artyom V. Poptsov <poptsov.artyom@gmail.com>
|
||||
;;; Copyright © 2022 Paul A. Patience <paul@apatience.com>
|
||||
;;;
|
||||
;;; This file is part of GNU Guix.
|
||||
;;;
|
||||
|
|
@ -178,6 +180,7 @@
|
|||
#:use-module (gnu packages icu4c)
|
||||
#:use-module (gnu packages inkscape)
|
||||
#:use-module (gnu packages image)
|
||||
#:use-module (gnu packages image-processing)
|
||||
#:use-module (gnu packages imagemagick)
|
||||
#:use-module (gnu packages jupyter)
|
||||
#:use-module (gnu packages kerberos)
|
||||
|
|
@ -3589,7 +3592,7 @@ files.")
|
|||
(define-public python-cli-helpers
|
||||
(package
|
||||
(name "python-cli-helpers")
|
||||
(version "2.0.1")
|
||||
(version "2.2.1")
|
||||
(source
|
||||
(origin
|
||||
;; There's no source tarball on PyPI.
|
||||
|
|
@ -3599,13 +3602,12 @@ files.")
|
|||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "1bg2iw9l5dip0kbs00hajdk2v18wvhssbnq8hdf71278qf0wks5l"))))
|
||||
(base32 "1hzavh9v9lkd1dn9f0nvg80f7v4banxvcrj10zy72przqz51k1sb"))))
|
||||
(build-system python-build-system)
|
||||
(native-inputs
|
||||
(list python-pytest))
|
||||
(propagated-inputs
|
||||
(list python-wcwidth python-configobj python-tabulate
|
||||
python-terminaltables))
|
||||
(list python-wcwidth python-configobj python-tabulate))
|
||||
(home-page "https://github.com/dbcli/cli_helpers")
|
||||
(synopsis "Helpers for building command-line apps")
|
||||
(description
|
||||
|
|
@ -5641,13 +5643,13 @@ interested parties to subscribe to events, or \"signals\".")
|
|||
(define-public pelican
|
||||
(package
|
||||
(name "pelican")
|
||||
(version "4.7.1")
|
||||
(version "4.7.2")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "pelican" version))
|
||||
(sha256
|
||||
(base32 "1sfckd3fhgnj305002fi3fdhkynric1ck7a5i8qany7k3vdsbasv"))))
|
||||
(base32 "0m1kndc98hhnlq0yl05f4lzccw555pkxnrajj6lks18yh491kw8w"))))
|
||||
(build-system python-build-system)
|
||||
(inputs
|
||||
(list python-blinker
|
||||
|
|
@ -7738,6 +7740,65 @@ write a wide range of image data, including animated images, video, volumetric
|
|||
data, and scientific formats.")
|
||||
(license license:bsd-2)))
|
||||
|
||||
(define-public python-pyvips
|
||||
(package
|
||||
(name "python-pyvips")
|
||||
(version "2.2.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "pyvips" version))
|
||||
(sha256
|
||||
(base32 "0lq71iiic4pc8qhxr60gi141w25pjnn4vsh05d5l0fjkgjsv137b"))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
(list #:phases
|
||||
#~(modify-phases %standard-phases
|
||||
;; Maybe switch to API mode (i.e., build the C extension)?
|
||||
;; It is advertised as faster to start up and run.
|
||||
;; However, even with ‘pkg-config’ and ‘python-pkgconfig’ in
|
||||
;; ‘native-inputs’, the API mode build fails with:
|
||||
;;
|
||||
;; Falling back to ABI mode. Details: unable to find pkg-config package "vips"
|
||||
;;
|
||||
;; The build doesn't actually fail without the below
|
||||
;; substitution, it's just slower because ‘setup.py’ tries
|
||||
;; (unsuccessfully) to download the Python ‘pkgconfig’ module.
|
||||
(add-after 'unpack 'fix-build
|
||||
(lambda _
|
||||
(substitute* "setup.py"
|
||||
(("^( +setup_)API\\(\\)\n" _ prefix)
|
||||
(string-append prefix "ABI()\n")))))
|
||||
(add-after 'unpack 'fix-paths
|
||||
(lambda _
|
||||
(substitute* "pyvips/__init__.py"
|
||||
(("^( +_vips_libname) = '(libvips.so.42)'"
|
||||
_ var libname)
|
||||
(format #f "~a = '~a/lib/~a'"
|
||||
var #$(this-package-input "vips") libname))
|
||||
(("^( +_gobject_libname) = '(libgobject-2.0.so.0)'"
|
||||
_ var libname)
|
||||
(format #f "~a = '~a/lib/~a'"
|
||||
var #$(this-package-input "glib") libname)))))
|
||||
(replace 'check
|
||||
(lambda* (#:key tests? #:allow-other-keys)
|
||||
(when tests?
|
||||
(invoke "python" "setup.py" "test")))))))
|
||||
(native-inputs
|
||||
(list python-pyperf
|
||||
python-pytest
|
||||
python-pytest-flake8
|
||||
python-pytest-runner))
|
||||
(inputs
|
||||
(list glib vips))
|
||||
(propagated-inputs
|
||||
(list python-cffi))
|
||||
(home-page "https://github.com/libvips/pyvips")
|
||||
(synopsis "Python bindings for VIPS")
|
||||
(description "The @code{pyvips} package provides Python bindings for VIPS,
|
||||
a multithreaded image-processing system with low memory needs.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-pycparser
|
||||
(package
|
||||
(name "python-pycparser")
|
||||
|
|
@ -9284,10 +9345,8 @@ installing @code{kernelspec}s for use with Jupyter frontends.")
|
|||
"1ikqvv335qfrhmlji0iclci6pnm2c3fvnxf031jr1d68j79g6ypd"))))
|
||||
(build-system python-build-system)
|
||||
(arguments '(#:tests? #f)) ;no test suite
|
||||
(propagated-inputs
|
||||
(list python-ipykernel))
|
||||
(inputs
|
||||
(list pari-gp readline))
|
||||
(list pari-gp readline python-ipykernel))
|
||||
(home-page "https://github.com/sagemath/pari-jupyter")
|
||||
(synopsis "Jupyter kernel for PARI/GP")
|
||||
(description "The package provides a PARI/GP kernel for Jupyter.")
|
||||
|
|
@ -10071,6 +10130,25 @@ generate MPS or LP files and call GLPK, COIN CLP/CBC, CPLEX, and GUROBI to
|
|||
solve linear problems.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-py-tes
|
||||
(package
|
||||
(name "python-py-tes")
|
||||
(version "0.4.2")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "py-tes" version))
|
||||
(sha256
|
||||
(base32 "0b272y392v0mnq0f3sm5kgcx8fn4qwfbym89hhvqxz3xkganr4pn"))))
|
||||
(build-system python-build-system)
|
||||
(propagated-inputs
|
||||
(list python-attrs python-dateutil python-future python-requests))
|
||||
(home-page "https://github.com/ohsu-comp-bio/py-tes")
|
||||
(synopsis "Library for communicating with the GA4GH Task Execution API")
|
||||
(description "This package provides a library for communicating with the
|
||||
GA4GH Task Execution API.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-toposort
|
||||
(package
|
||||
(name "python-toposort")
|
||||
|
|
@ -10172,6 +10250,147 @@ providing a clean and modern domain specific specification language (DSL) in
|
|||
Python style, together with a fast and comfortable execution environment.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public snakemake-6
|
||||
(package
|
||||
(inherit snakemake)
|
||||
(name "snakemake")
|
||||
(version "6.15.5")
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/snakemake/snakemake")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "09yrpi9f86r9yvcm2dfjs5zy87c4j31bxama77kfd6y8yfrrjlai"))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
'(#:phases
|
||||
(modify-phases %standard-phases
|
||||
;; For cluster execution Snakemake will call Python. Since there is
|
||||
;; no suitable GUIX_PYTHONPATH set, cluster execution will fail. We
|
||||
;; fix this by calling the snakemake wrapper instead.
|
||||
|
||||
;; XXX: There is another instance of sys.executable on line 692, but
|
||||
;; it is not clear how to patch it.
|
||||
(add-after 'unpack 'call-wrapper-not-wrapped-snakemake
|
||||
(lambda* (#:key outputs #:allow-other-keys)
|
||||
(substitute* "snakemake/executors/__init__.py"
|
||||
(("\\{sys.executable\\} -m snakemake")
|
||||
(string-append (assoc-ref outputs "out")
|
||||
"/bin/snakemake")))))
|
||||
(replace 'check
|
||||
(lambda* (#:key tests? #:allow-other-keys)
|
||||
(when tests?
|
||||
(setenv "HOME" "/tmp")
|
||||
;; This test attempts to change S3 buckets on AWS and fails
|
||||
;; because there are no AWS credentials.
|
||||
(delete-file "tests/test_tibanna.py")
|
||||
(invoke "pytest")))))))
|
||||
(inputs
|
||||
(list python-appdirs
|
||||
python-configargparse
|
||||
python-connection-pool
|
||||
python-datrie
|
||||
python-docutils
|
||||
python-filelock
|
||||
python-gitpython
|
||||
python-jinja2
|
||||
python-jsonschema
|
||||
python-nbformat
|
||||
python-networkx
|
||||
python-psutil
|
||||
python-pulp
|
||||
python-pyyaml
|
||||
python-py-tes
|
||||
python-ratelimiter
|
||||
python-requests
|
||||
python-smart-open
|
||||
python-stopit
|
||||
python-tabulate
|
||||
python-toposort
|
||||
python-wrapt))
|
||||
(native-inputs
|
||||
(list git-minimal
|
||||
python-wrapper
|
||||
python-pytest
|
||||
python-pandas
|
||||
python-requests-mock))))
|
||||
|
||||
(define-public snakemake-7
|
||||
(package
|
||||
(inherit snakemake-6)
|
||||
(name "snakemake")
|
||||
(version "7.7.0")
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/snakemake/snakemake")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "1qrqbmx4cbis0wxr6dl2rdjv9v627sbirsz6v5c31vlbqwkvs04q"))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
'(#:phases
|
||||
(modify-phases %standard-phases
|
||||
;; For cluster execution Snakemake will call Python. Since there is
|
||||
;; no suitable GUIX_PYTHONPATH set, cluster execution will fail. We
|
||||
;; fix this by calling the snakemake wrapper instead.
|
||||
|
||||
;; XXX: There is another instance of sys.executable on line 692, but
|
||||
;; it is not clear how to patch it.
|
||||
(add-after 'unpack 'call-wrapper-not-wrapped-snakemake
|
||||
(lambda* (#:key outputs #:allow-other-keys)
|
||||
(substitute* "snakemake/executors/__init__.py"
|
||||
(("\\{sys.executable\\} -m snakemake")
|
||||
(string-append (assoc-ref outputs "out")
|
||||
"/bin/snakemake")))))
|
||||
(replace 'check
|
||||
(lambda* (#:key tests? #:allow-other-keys)
|
||||
(when tests?
|
||||
(setenv "HOME" "/tmp")
|
||||
;; This test attempts to change S3 buckets on AWS and fails
|
||||
;; because there are no AWS credentials.
|
||||
(delete-file "tests/test_tibanna.py")
|
||||
;; It's a similar story with this test, which requires access
|
||||
;; to the Google Storage service.
|
||||
(delete-file "tests/test_google_lifesciences.py")
|
||||
(invoke "pytest")))))))
|
||||
(inputs
|
||||
(list python-appdirs
|
||||
python-configargparse
|
||||
python-connection-pool
|
||||
python-datrie
|
||||
python-docutils
|
||||
python-filelock
|
||||
python-gitpython
|
||||
python-jinja2
|
||||
python-jsonschema
|
||||
python-nbformat
|
||||
python-networkx
|
||||
python-psutil
|
||||
python-pulp
|
||||
python-pyyaml
|
||||
python-py-tes
|
||||
python-ratelimiter
|
||||
python-requests
|
||||
python-retry
|
||||
python-smart-open
|
||||
python-stopit
|
||||
python-tabulate
|
||||
python-toposort
|
||||
python-wrapt
|
||||
python-yte))
|
||||
(native-inputs
|
||||
(list git-minimal
|
||||
python-wrapper
|
||||
python-pytest
|
||||
python-pandas
|
||||
python-requests-mock))))
|
||||
|
||||
(define-public python-pyqrcode
|
||||
(package
|
||||
(name "python-pyqrcode")
|
||||
|
|
@ -13510,6 +13729,34 @@ Debian-related files, such as:
|
|||
JSON Reference and JSON Pointer.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-fastbencode
|
||||
(package
|
||||
(name "python-fastbencode")
|
||||
(version "0.0.7")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "fastbencode" version))
|
||||
(sha256
|
||||
(base32 "1r66w3vpmvfmssshjpgqaj2m14c8p94nymr96mwn61idajz9mg5n"))))
|
||||
(build-system python-build-system)
|
||||
(home-page "https://github.com/breezy-team/fastbencode")
|
||||
(synopsis "Python Bencode (de)serializer with optional fast C extensions")
|
||||
(description
|
||||
"The fastbencode Python package implements the bencode serialization
|
||||
format for storing and transmitting loosely structured data, originally used
|
||||
by BitTorrent.
|
||||
|
||||
The format can encode four different types of values: byte strings, integers,
|
||||
lists, and dictionaries (associative arrays). It's simple and unaffected by
|
||||
endianness,
|
||||
|
||||
This package includes both a pure-Python version and an optional C extension
|
||||
based on Cython. Both provide the same functionality, but the C version has
|
||||
significantly better performance.")
|
||||
(license (list license:expat ; _bencode_py.py
|
||||
license:gpl2+)))) ; __init__.py
|
||||
|
||||
(define-public python-fastjsonschema
|
||||
(package
|
||||
(name "python-fastjsonschema")
|
||||
|
|
@ -14014,7 +14261,7 @@ in the data.")
|
|||
"1iqrxhd8hvlyf8cqbc731ssnwm61wrycnbiczy5wsfahd3hlh8i4"))))
|
||||
(build-system python-build-system)
|
||||
(propagated-inputs
|
||||
(list python-ipykernel python-jupyter-client python-prompt-toolkit-2
|
||||
(list python-ipykernel python-jupyter-client python-prompt-toolkit
|
||||
python-pygments))
|
||||
(native-inputs
|
||||
(list python-nose python-pytest))
|
||||
|
|
@ -14046,9 +14293,8 @@ Jupyter kernels such as IJulia and IRKernel.")
|
|||
(assoc-ref outputs "out") "/bin"))))))))
|
||||
;; Remove the python-ipython propagated input, to avoid the cycle
|
||||
(propagated-inputs
|
||||
(alist-delete
|
||||
"python-ipython"
|
||||
(package-propagated-inputs python-jupyter-console)))))
|
||||
(modify-inputs (package-propagated-inputs python-jupyter-console)
|
||||
(delete "python-ipython")))))
|
||||
|
||||
(define-public python-qtconsole
|
||||
(package
|
||||
|
|
@ -14428,6 +14674,23 @@ be set via config files and/or environment variables.")
|
|||
(home-page "https://github.com/bw2/ConfigArgParse")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-connection-pool
|
||||
(package
|
||||
(name "python-connection-pool")
|
||||
(version "0.0.3")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "connection_pool" version))
|
||||
(sha256
|
||||
(base32 "1p6hfkcl4n3hhhcgjbaxn21i7b1yipag6j7dnilir4k5xxx9whmz"))))
|
||||
(build-system python-build-system)
|
||||
(home-page "https://github.com/zhouyl/ConnectionPool")
|
||||
(synopsis "Thread-safe connection pool")
|
||||
(description "This package provides a library implementing a thread-safe
|
||||
connection pool.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-argparse-manpage
|
||||
(package
|
||||
(name "python-argparse-manpage")
|
||||
|
|
@ -16546,13 +16809,13 @@ is made as zipfile like as possible.")
|
|||
(define-public python-rich
|
||||
(package
|
||||
(name "python-rich")
|
||||
(version "10.2.2")
|
||||
(version "12.4.1")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "rich" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1z5m5brcdf3vndpavcqj5nl35xby4x5rfj48klhwqycfqf3g9cqp"))))
|
||||
"149vjb4cpf9mz14iig0b6d8065dm8aslp6pc45g9ipmp1wf00ffj"))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
`(#:phases
|
||||
|
|
@ -16581,7 +16844,7 @@ is made as zipfile like as possible.")
|
|||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32
|
||||
"19f4svb363sn5708qkpa6lakmiwzyb25h8kmh7bqrsbbrvi9hr70"))))))
|
||||
"17c3gljn8zv32xnpsgd3fqgqn4r7cdfqri41hridcpbhssdgkyp9"))))))
|
||||
(home-page "https://github.com/willmcgugan/rich")
|
||||
(synopsis "Render rich text and more to the terminal")
|
||||
(description
|
||||
|
|
@ -18504,7 +18767,7 @@ for Kivy, the multitouch application platform.")
|
|||
(define-public python-kivy
|
||||
(package
|
||||
(name "python-kivy")
|
||||
(version "1.10.1")
|
||||
(version "2.1.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
|
|
@ -18512,7 +18775,7 @@ for Kivy, the multitouch application platform.")
|
|||
(file-name (string-append name "-" version ".tar.gz"))
|
||||
(sha256
|
||||
(base32
|
||||
"1zzxjdp78hfjjiklzr82l4zwibwcq4j6kgicspqs6iyyfn5yisbw"))))
|
||||
"1cq4djfn7h8560mvz94dydsldg2jpp5w9rby7nafgmbh7fxg65is"))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
`(#:tests? #f ; Tests require many optional packages
|
||||
|
|
@ -18522,7 +18785,7 @@ for Kivy, the multitouch application platform.")
|
|||
(lambda* (#:key inputs #:allow-other-keys)
|
||||
(setenv "KIVY_SDL2_PATH"
|
||||
(search-input-directory inputs "/include/SDL2"))))
|
||||
(add-before 'sanity-check 'set-home
|
||||
(add-before 'build 'set-home
|
||||
(lambda _
|
||||
;; 'kivy/__init__.py' wants to create $HOME/.kivy.
|
||||
(setenv "HOME" (getcwd)))))))
|
||||
|
|
@ -18542,6 +18805,35 @@ for Kivy, the multitouch application platform.")
|
|||
multitouch applications.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-kivymd
|
||||
(package
|
||||
(name "python-kivymd")
|
||||
(version "0.104.2")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "kivymd" version))
|
||||
(sha256
|
||||
(base32 "04lwy6j0agrdwa4a6dl6qs97nx9ysmscmm8psvdzjpyj8aa1zg4p"))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
`(#:tests? #f ;tests require network
|
||||
#:phases
|
||||
(modify-phases %standard-phases
|
||||
(add-before 'sanity-check 'set-home
|
||||
(lambda _
|
||||
;; 'kivy/__init__.py' wants to create $HOME/.kivy.
|
||||
(setenv "HOME" (getcwd)))))))
|
||||
(native-inputs (list python-docutils))
|
||||
(propagated-inputs
|
||||
(list python-kivy python-pillow python-pygments python-kivy-garden))
|
||||
(home-page "https://github.com/kivymd/KivyMD")
|
||||
(synopsis "Material Design compliant widgets for use with Kivy")
|
||||
(description
|
||||
"This package provides Kivy widgets that approximate Google's Material
|
||||
Design spec without sacrificing ease of use or application performance.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python2-kivy
|
||||
(package-with-python2 python-kivy))
|
||||
|
||||
|
|
@ -23733,19 +24025,19 @@ identifying what the file is.")
|
|||
(define-public python-tldextract
|
||||
(package
|
||||
(name "python-tldextract")
|
||||
(version "2.2.0")
|
||||
(version "3.3.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "tldextract" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1d5s8v6kpsgazyahflhji1cfdcf89rv7l7z55v774bhzvcjp2y99"))))
|
||||
"1wac4yvcpgqjvls770mfx165amvy7gr00nnd2w24bqqwyamj9kdd"))))
|
||||
(build-system python-build-system)
|
||||
(native-inputs
|
||||
(list python-pytest python-responses))
|
||||
(list python-pytest python-responses python-setuptools-scm))
|
||||
(propagated-inputs
|
||||
(list python-idna python-requests python-requests-file))
|
||||
(list python-filelock python-idna python-requests python-requests-file))
|
||||
(home-page
|
||||
"https://github.com/john-kurkowski/tldextract")
|
||||
(synopsis
|
||||
|
|
@ -23763,7 +24055,7 @@ Public Suffix List's private domains as well.")
|
|||
(define-public python-tldr
|
||||
(package
|
||||
(name "python-tldr")
|
||||
(version "1.2.1")
|
||||
(version "3.1.0")
|
||||
(source
|
||||
(origin
|
||||
;; There's no test in PyPI.
|
||||
|
|
@ -23773,20 +24065,23 @@ Public Suffix List's private domains as well.")
|
|||
(commit version)))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "0n9wqvjxspm18vlxf9j9slrcydshk4rkv5nwkrqhfq606n6zvks4"))))
|
||||
(base32 "1hxmprqg8c4cvs19n7f80f3y7jj74i8sc2dmq2gdjmsdrb54bbzc"))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
`(#:phases
|
||||
(modify-phases %standard-phases
|
||||
(replace 'check
|
||||
(lambda* (#:key tests? #:allow-other-keys)
|
||||
(when tests?
|
||||
;; This test fails. It tries to open a network socket.
|
||||
(invoke "pytest" "-vv" "-k" "not test_error_message")))))))
|
||||
(list #:phases
|
||||
#~(modify-phases %standard-phases
|
||||
(add-after 'build 'build-doc
|
||||
(lambda _
|
||||
(invoke "make" "-C" "docs")))
|
||||
(replace 'check
|
||||
(lambda* (#:key tests? #:allow-other-keys)
|
||||
(when tests?
|
||||
;; This test fails. It tries to open a network socket.
|
||||
(invoke "pytest" "-vv" "-k" "not test_error_message")))))))
|
||||
(native-inputs
|
||||
(list python-pytest python-pytest-runner))
|
||||
(list python-pytest python-pytest-runner python-sphinx-argparse))
|
||||
(inputs
|
||||
(list python-argcomplete python-colorama python-termcolor))
|
||||
(list python-argcomplete python-colorama python-termcolor python-shtab))
|
||||
(home-page "https://github.com/tldr-pages/tldr-python-client")
|
||||
(synopsis "Python command-line client for tldr pages")
|
||||
(description "This package provides the @code{tldr} command allowing users
|
||||
|
|
@ -26233,13 +26528,13 @@ scripts to load entry points more quickly.")
|
|||
(define-public python-funcparserlib
|
||||
(package
|
||||
(name "python-funcparserlib")
|
||||
(version "1.0.0a0") ; last stable release was in 2013
|
||||
(version "1.0.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "funcparserlib" version))
|
||||
(sha256
|
||||
(base32 "0ama5w5lswxlp3l4qfqq3zlg7i6qkw45jfl1f7p8w1vnj8m47yz6"))))
|
||||
(base32 "0swbqf53x7lfnczvi566s1g3nkf5mfrxz7sbpyymricz57a3vlvx"))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
`(#:tests? #f)) ; no tests in PyPI and no setup.py in GitHub
|
||||
|
|
@ -30986,6 +31281,53 @@ uses the parsed regular expression, so you get a much more accurate result
|
|||
than trying to just split strings.")
|
||||
(license license:asl2.0)))
|
||||
|
||||
(define-public python-pyperf
|
||||
(package
|
||||
(name "python-pyperf")
|
||||
(version "2.3.1")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "pyperf" version))
|
||||
(sha256
|
||||
(base32 "189qf9wdbig0fk4n3bavx8acgdbay5lllfvw48jvbfaafb7y5hja"))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
'(#:phases
|
||||
(modify-phases %standard-phases
|
||||
(add-after 'unpack 'fix-tests
|
||||
(lambda _
|
||||
;; Some of these tests fail with:
|
||||
;;
|
||||
;; ModuleNotFoundError: No module named 'pyperf'
|
||||
;;
|
||||
;; even when calling ‘add-installed-pythonpath’ in the ‘check’
|
||||
;; phase.
|
||||
(delete-file "pyperf/tests/test_examples.py")))
|
||||
(replace 'check
|
||||
(lambda* (#:key tests? #:allow-other-keys)
|
||||
(when tests?
|
||||
;; From tox.ini's ‘testenv.commands’.
|
||||
(invoke "python" "-bb" "-Wd"
|
||||
"-m" "unittest" "discover"
|
||||
"-s" "pyperf/tests/" "-v")))))))
|
||||
(native-inputs
|
||||
(list python-psutil))
|
||||
(home-page "https://github.com/psf/pyperf")
|
||||
(synopsis "Toolkit for running Python benchmarks")
|
||||
(description "The Python @code{pyperf} module is a toolkit for writing,
|
||||
running and analyzing benchmarks. It features a simple API that can:
|
||||
|
||||
@itemize
|
||||
@item automatically calibrate a benchmark for a time budget;
|
||||
@item spawn multiple worker processes;
|
||||
@item compute the mean and standard deviation;
|
||||
@item detect if a benchmark result seems unstable;
|
||||
@item store benchmark results in JSON format;
|
||||
@item support multiple units: seconds, bytes and integer.
|
||||
@end itemize")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-pydispatcher
|
||||
(package
|
||||
(name "python-pydispatcher")
|
||||
|
|
@ -31226,3 +31568,223 @@ object, which can be useful if you want to force your objects into a table.")
|
|||
"The @code{deep-merge} Python library provides a toolset to deeply merge
|
||||
nested data structures in Python like lists and dictionaries.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-murmurhash3
|
||||
(package
|
||||
(name "python-murmurhash3")
|
||||
(version "2.3.5")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "murmurhash3" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1gdzys1212dx70byz07ipknbw1awbqskh6aznlkm85js8b8qfczm"))))
|
||||
(build-system python-build-system)
|
||||
(native-inputs (list python-cython python-pytest))
|
||||
(inputs (list python))
|
||||
(arguments
|
||||
(list #:modules
|
||||
'((ice-9 ftw) (ice-9 match)
|
||||
(guix build utils)
|
||||
(guix build python-build-system))
|
||||
#:phases
|
||||
#~(modify-phases %standard-phases
|
||||
(add-after 'unpack 'set-source-file-times-to-1980
|
||||
(lambda _
|
||||
(let ((circa-1980 (* 10 366 24 60 60)))
|
||||
(ftw "."
|
||||
(lambda (file stat flag)
|
||||
(utime file circa-1980 circa-1980) #t))))))))
|
||||
(home-page "https://github.com/veegee/mmh3")
|
||||
(synopsis "Python wrapper for MurmurHash (MurmurHash3)")
|
||||
(description
|
||||
"@code{murmurhash3} is a Python library for MurmurHash (MurmurHash3), a set
|
||||
of fast and robust hash functions. This library is a Python extension module
|
||||
written in C.")
|
||||
(license license:public-domain)))
|
||||
|
||||
(define-public python-murmurhash
|
||||
(package
|
||||
(name "python-murmurhash")
|
||||
(version "1.0.7")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "murmurhash" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0vwkn98c703nvsigl2nz99rax2pafkx3djjfkgc49jiipmp3j2k3"))))
|
||||
(build-system python-build-system)
|
||||
(native-inputs (list python-cython python-pytest))
|
||||
(inputs (list python python-murmurhash3))
|
||||
(arguments
|
||||
(list #:modules
|
||||
'((ice-9 ftw) (ice-9 match)
|
||||
(guix build utils)
|
||||
(guix build python-build-system))
|
||||
#:phases
|
||||
#~(modify-phases %standard-phases
|
||||
(add-after 'unpack 'set-source-file-times-to-1980
|
||||
(lambda _
|
||||
(let ((circa-1980 (* 10 366 24 60 60)))
|
||||
(ftw "."
|
||||
(lambda (file stat flag)
|
||||
(utime file circa-1980 circa-1980) #t))))))))
|
||||
(home-page "https://github.com/explosion/murmurhash")
|
||||
(synopsis "Cython bindings for MurmurHash2")
|
||||
(description "This package provides Cython bindings for MurmurHash2.")
|
||||
(license license:expat)))
|
||||
|
||||
;; Scooby requires for its test suite a ‘pyvips’ package that is missing its
|
||||
;; VIPS dependency.
|
||||
(define python-pyvips-for-python-scooby
|
||||
(package
|
||||
(inherit python-pyvips)
|
||||
(name "python-pyvips-for-python-scooby")
|
||||
(arguments
|
||||
(substitute-keyword-arguments (package-arguments python-pyvips)
|
||||
((#:phases phases)
|
||||
#~(modify-phases #$phases
|
||||
(delete 'fix-paths)
|
||||
;; The checks won't succeed without VIPS.
|
||||
(delete 'check)
|
||||
(delete 'sanity-check)))))
|
||||
(inputs
|
||||
(modify-inputs (package-inputs python-pyvips)
|
||||
(delete "vips")))
|
||||
(synopsis "pyvips for Scooby's test suite")))
|
||||
|
||||
(define-public python-scooby
|
||||
(package
|
||||
(name "python-scooby")
|
||||
(version "0.5.12")
|
||||
(source
|
||||
;; The PyPI tarball does not contain the tests.
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/banesullivan/scooby")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "1gkpmz8wl3jg8ylf1na35308sznw2g9wx33zqlyq5i2gpy2ml9mw"))))
|
||||
(build-system python-build-system)
|
||||
(native-inputs
|
||||
(list python-beautifulsoup4
|
||||
python-numpy
|
||||
python-pytest
|
||||
python-pytest-cov
|
||||
python-pyvips-for-python-scooby
|
||||
python-scipy))
|
||||
(propagated-inputs
|
||||
(list python-psutil))
|
||||
(arguments
|
||||
'(#:phases
|
||||
(modify-phases %standard-phases
|
||||
(add-after 'unpack 'fix-tests
|
||||
(lambda _
|
||||
(substitute* "tests/test_scooby.py"
|
||||
;; The test suite uses the no-version PyPI package
|
||||
;; (https://pypi.org/project/no-version/),
|
||||
;; but it doesn't seem worth packaging in Guix just for this.
|
||||
(("scooby\\.report\\.VERSION_NOT_FOUND")
|
||||
"scooby.report.MODULE_NOT_FOUND")
|
||||
(("^ +import no_version # noqa.*") ""))))
|
||||
(replace 'check
|
||||
(lambda* (#:key tests? #:allow-other-keys)
|
||||
(when tests?
|
||||
(invoke "pytest")))))))
|
||||
(home-page "https://github.com/banesullivan/scooby")
|
||||
(synopsis "Report hardware information and Python package versions")
|
||||
(description
|
||||
"The Scooby package reports the following information about the currently
|
||||
running system:
|
||||
|
||||
@itemize
|
||||
@item operating system name;
|
||||
@item hardware information including machine type (e.g., @samp{i386},
|
||||
@samp{x86_64}, etc.), CPU count and total RAM;
|
||||
@item Python environment (e.g., Python, IPython, etc.);
|
||||
@item file system name;
|
||||
@item Python version;
|
||||
@item versions of specified Python packages.
|
||||
@end itemize
|
||||
|
||||
It can generate reports as HTML tables or plain text lists.
|
||||
|
||||
Scooby has no required dependencies, and only few optional dependencies.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-cymem
|
||||
(package
|
||||
(name "python-cymem")
|
||||
(version "2.0.6")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "cymem" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0pkyy60zk9654sj991w111p1l0m8wvz36nslw96x6nb9h6sjb5qn"))))
|
||||
(build-system python-build-system)
|
||||
(native-inputs
|
||||
(list python-cython
|
||||
python-pytest))
|
||||
(inputs
|
||||
(list python))
|
||||
(arguments
|
||||
(list
|
||||
#:modules '((ice-9 ftw)
|
||||
(ice-9 match)
|
||||
(guix build utils)
|
||||
(guix build python-build-system))
|
||||
#:phases
|
||||
#~(modify-phases %standard-phases
|
||||
(add-after 'unpack 'set-source-file-times-to-1980
|
||||
;; XXX One of the tests uses a ZIP library to pack up some of the
|
||||
;; source tree, and fails with "ZIP does not support timestamps
|
||||
;; before 1980". Work around this by setting the file times in the
|
||||
;; source tree to sometime in early 1980.
|
||||
(lambda _
|
||||
(let ((circa-1980 (* 10 366 24 60 60)))
|
||||
(ftw "." (lambda (file stat flag)
|
||||
(utime file circa-1980 circa-1980)
|
||||
#t))))))))
|
||||
(home-page "https://github.com/explosion/cymem")
|
||||
(synopsis "Cython memory pool for RAII-style memory management")
|
||||
(description
|
||||
"Cymem provides two small memory-management helpers for Cython. They make it
|
||||
easy to tie memory to a Python object's life-cycle, so that the memory is freed
|
||||
when the object is garbage collected.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-preshed
|
||||
(package
|
||||
(name "python-preshed")
|
||||
(version "3.0.6")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "preshed" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0akpydd23xqxx9d04drsnw9140rb3cv07r1zpzqz5wm0lf47afzv"))))
|
||||
(build-system python-build-system)
|
||||
(native-inputs (list python-cython python-cymem python-pytest))
|
||||
(inputs (list python python-cymem python-murmurhash))
|
||||
(arguments
|
||||
(list #:modules
|
||||
'((ice-9 ftw) (ice-9 match)
|
||||
(guix build utils)
|
||||
(guix build python-build-system))
|
||||
#:phases
|
||||
#~(modify-phases %standard-phases
|
||||
(add-after 'unpack 'set-source-file-times-to-1980
|
||||
(lambda _
|
||||
(let ((circa-1980 (* 10 366 24 60 60)))
|
||||
(ftw "."
|
||||
(lambda (file stat flag)
|
||||
(utime file circa-1980 circa-1980) #t))))))))
|
||||
(home-page "https://github.com/explosion/preshed")
|
||||
(synopsis "Cython hash tables that assume keys are pre-hashed")
|
||||
(description
|
||||
"Simple but high performance Cython hash table mapping pre-randomized keys
|
||||
to void* values.")
|
||||
(license license:expat)))
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue