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gnu: python-scikit-learn: Update to 0.20.1.

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* gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.1.
[source](patches): Remove.
[arguments]: Skip network tests with pytest instead of deleting files.  Make
sure $HOME is writable.
(python2-scikit-learn): Rewrite in terms of PACKAGE-WITH-PYTHON2.
This commit is contained in:
Marius Bakke 2018-11-22 01:47:36 +01:00
parent ec8130eb23
commit 7ff3f3d22c
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3 changed files with 8 additions and 53 deletions
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35
gnu/packages/machine-learning.scm
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@ -706,7 +706,7 @@ computing environments.")
(define-public python-scikit-learn
(package
(name "python-scikit-learn")
(version "0.19.2")
(version "0.20.1")
(source
(origin
(method git-fetch)
@ -716,9 +716,7 @@ computing environments.")
(file-name (git-file-name name version))
(sha256
(base32
"1dk9hdj01c0bny4ps78b7869fjw9gr6qklxf6wyql8h6nh4k19xm"))
(patches (search-patches
"python-scikit-learn-fix-test-non-determinism.patch"))))
"0qv7ir1fy9vjar3llc72yxmfja3gxm5icdf0y3q57vsn3wcdglkz"))))
(build-system python-build-system)
(arguments
`(#:phases
@ -729,11 +727,11 @@ computing environments.")
(lambda _
;; Restrict OpenBLAS threads to prevent segfaults while testing!
(setenv "OPENBLAS_NUM_THREADS" "1")
;; Disable tests that require network access
(delete-file "sklearn/datasets/tests/test_mldata.py")
(delete-file "sklearn/datasets/tests/test_rcv1.py")
(invoke "pytest" "sklearn")
#t))
;; Some tests require write access to $HOME.
(setenv "HOME" "/tmp")
(invoke "pytest" "sklearn" "-m" "not network")))
;; FIXME: This fails with permission denied
(delete 'reset-gzip-timestamps))))
(inputs
@ -753,24 +751,7 @@ data analysis.")
(license license:bsd-3)))
(define-public python2-scikit-learn
(let ((parent (package-with-python2 python-scikit-learn)))
(package (inherit parent)
(arguments
(substitute-keyword-arguments (package-arguments parent)
((#:phases phases)
`(modify-phases ,phases
(replace 'check
(lambda _
;; Restrict OpenBLAS threads to prevent segfaults while testing!
(setenv "OPENBLAS_NUM_THREADS" "1")
;; Some tests expect to be able to write to HOME.
(setenv "HOME" "/tmp")
;; Disable tests that require network access
(delete-file "sklearn/datasets/tests/test_kddcup99.py")
(delete-file "sklearn/datasets/tests/test_mldata.py")
(delete-file "sklearn/datasets/tests/test_rcv1.py")
(invoke "pytest" "sklearn")
#t)))))))))
(package-with-python2 python-scikit-learn))
(define-public python-autograd
(let* ((commit "442205dfefe407beffb33550846434baa90c4de7")