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gnu: igraph: Update to 0.10.7.

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* gnu/packages/graph.scm (igraph): Update to 0.10.7.
[source]: Use git-fetch. Apply patch.
<snippet>: Remove the entire "vendor" and "src/isomorphism/bliss" directories.
Patch CMakeLists.txt to not build and use vendored dependencies.
[arguments]: Add -DIGRAPH_INTEGER_SIZE=64 to #:configure-flags. Add phases to
use unbundled libraries and build documentation.
[native-inputs]: Add bison, docbook-xml-4.3, docbook-xsl, flex, pcg-c, python,
source-highlight and xmlto.
[inputs]: Remove gmp and libxml2. Add bliss and suitesparse-cxsparse.
* gnu/packages/patches/igraph-fix-varargs-integer-size.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
This commit is contained in:
David Elsing 2023-11-01 22:57:15 +00:00 • committed by Ludovic Courtès
parent aa4959e602
commit 808f919063
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GPG key ID: 090B11993D9AEBB5
3 changed files with 127 additions and 27 deletions
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39
gnu/packages/patches/igraph-fix-varargs-integer-size.patch Normal file
View file

@ -0,0 +1,39 @@
If the size of int is different from IGRAPH_INTEGER_SIZE, the integer size
passed to these vararg arguments is different from the assumed one,
leading to undefined behavior.
Submitted upstream: https://github.com/igraph/igraph/pull/2423
diff -ur a/examples/simple/igraph_union.c b/examples/simple/igraph_union.c
--- a/examples/simple/igraph_union.c
+++ b/examples/simple/igraph_union.c
@@ -103,7 +103,7 @@
igraph_vector_ptr_init(&glist, 10);
for (i = 0; i < igraph_vector_ptr_size(&glist); i++) {
VECTOR(glist)[i] = calloc(1, sizeof(igraph_t));
- igraph_vector_int_init_int_end(&v, -1, i, i + 1, 1, 0, -1);
+ igraph_vector_int_init_int_end(&v, -1, (int) i, (int) i + 1, 1, 0, -1);
igraph_create(VECTOR(glist)[i], &v, 0, IGRAPH_DIRECTED);
igraph_vector_int_destroy(&v);
}
@@ -123,7 +123,7 @@
igraph_vector_ptr_init(&glist, 10);
for (i = 0; i < igraph_vector_ptr_size(&glist); i++) {
VECTOR(glist)[i] = calloc(1, sizeof(igraph_t));
- igraph_vector_int_init_int_end(&v, -1, i, i + 1, 1, 0, -1);
+ igraph_vector_int_init_int_end(&v, -1, (int) i, (int) i + 1, 1, 0, -1);
igraph_create(VECTOR(glist)[i], &v, 0, IGRAPH_UNDIRECTED);
igraph_vector_int_destroy(&v);
}
diff -ur a/src/core/matrix.pmt b/src/core/matrix.pmt
--- a/src/core/matrix.pmt
+++ b/src/core/matrix.pmt
@@ -1863,7 +1863,7 @@
#ifdef FPRINTFUNC_ALIGNED
FPRINTFUNC_ALIGNED(file, VECTOR(column_width)[j], MATRIX(*m, i, j));
#else
- fprintf(file, format, VECTOR(column_width)[j], MATRIX(*m, i, j));
+ fprintf(file, format, (int) VECTOR(column_width)[j], MATRIX(*m, i, j));
#endif
}
fprintf(file, "\n");