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gnu: python-pandera: Update to 0.26.1.

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* gnu/packages/python-science.scm (python-pandera): Update to 0.26.1.
[source]: Switch to url-fetch, PyPI archive provides tests and build
successfully while git version missed a lot of sub module after install.
[arguments] <test-flags>: Rework skipped tests and ignored test files.
[inputs]: Add python-dask, python-distributed, python-geopandas,
python-hypothesis, python-modin, python-numpy, python-pandas,
python-scipy, and python-shapely.
[propagated-inputs]: Remove python-hypothesis-next, python-modin,
python-multimethod, python-numpy, python-pandas, python-pandas-stubs,
python-scipy, and python-wrapt; add python-typing-extensions.
[native-inputs]: Remove python-dask, python-fastapi, python-geopandas,
python-pyarrow, python-sphinx, and python-wheel; add python-joblib and
python-setuptools-scm.

Change-Id: I376f11e39c47875a5a70ee5f7d4653dd77403e28
This commit is contained in:
Sharlatan Hellseher 2025-09-24 21:46:44 +01:00
parent d99b119794
commit 8353cbeaf2
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1 changed files with 56 additions and 60 deletions
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gnu/packages/python-science.scm
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@ -3853,76 +3853,72 @@ idea of the remaining amount of computation to be done.")
(define-public python-pandera
(package
(name "python-pandera")
;; FIXME: The latest version requires hypothesis >= 6.92.7, which can't be
;; picked from python-hypothesis-next for some reason.
(version "0.18.0")
(version "0.26.1")
(source
(origin
;; No tests in the PyPI tarball.
(method git-fetch)
(uri (git-reference
(url "https://github.com/unionai-oss/pandera")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(method url-fetch)
(uri (pypi-uri "pandera" version))
(sha256
(base32 "14b5aij5zjkwvsimg0v00qvp59mhhq7ljim4qghcn432vkg9gh47"))))
(base32 "10px2wy3rb8gg2jyry8962yrd0m3jq88wgjcpyrk23bp55j5m9c1"))))
(build-system pyproject-build-system)
(arguments
(list
;; tests: 3093 passed, 48 skipped, 21 xfailed, 8232 warnings
#:test-flags
#~(list "--numprocesses" (number->string (min 8 (parallel-job-count)))
;; With higher threads count tests randomly fail during collection.
#~(list "--numprocesses" (number->string (min 4 (parallel-job-count)))
;; TODO: Ignore tests for not packaged python-ibis-framework,
;; python-polars, and python-pyspark.
"--ignore=tests/ibis"
"--ignore=tests/polars"
"--ignore=tests/pyspark"
"-k" (string-join
;; Failed: DID NOT RAISE <class 'pandera.errors.SchemaError'>
(list "not test_from_records_validates_the_schema"
"test_init_pandas_dataframe_errors"
"test_schema_dtype_crs_without_coerce"
"test_schema_from_dataframe"
"test_schema_model"
"test_validate_coerce_on_init"
;; multimethod.DispatchError: ('str_length: 0
;; methods found', (<class
;; 'pandas.core.series.Series'>, <class 'NoneType'>,
;; <class 'int'>), [])
"test_succeeding"
"test_failing"
"test_failing_with_none"
;; pandera.errors.SchemaError: Error while executing
;; check function: KeyError("foo")
"test_check_groups"
;; [pandas_series.py-plugin_mypy.ini-expected_errors13]
;; - assert 1 == 2
"test_pandas_stubs_false_positives"
;; TypeError: type 'Series' is not subscriptable
"test_pandas_modules_importable")
;; Network access is required.
(list "not test_items_endpoint"
"test_transactions_endpoint"
"test_upload_file_endpoint"
;; AssertionError: assert dtype('bool') == 'object'
"test_index_dtypes[dask-Index-True-bool]"
"test_index_dtypes[dask-Index-False-bool]"
;; TypeError: __class__ assignment: 'GeoDataFrame'
;; object layout differs from 'DataFrame'
"test_schema_model[data0-True]"
"test_schema_from_dataframe[data1-True]"
"test_schema_no_geometry")
" and not "))))
;; Pandera comes with a lot of extras. We test as many as possible, but do
;; not include all of them in the propagated-inputs. Currently, we have to
;; skip the pyspark and io tests due to missing packages python-pyspark
;; and python-frictionless.
(propagated-inputs (list python-hypothesis-next ;strategies extra
python-modin
python-multimethod
python-numpy
python-packaging
python-pandas
python-pandas-stubs ;mypy extra
python-pydantic-2
python-scipy ;hypotheses extra
python-typeguard
python-typing-inspect
python-wrapt))
(native-inputs (list python-dask ;dask extra
python-fastapi ;fastapi extra
python-geopandas ;geopandas extra
python-pyarrow ;needed to run fastapi tests
(native-inputs
(list python-joblib
python-pytest
python-pytest-asyncio
python-pytest-xdist
python-setuptools
python-sphinx
python-uvicorn ;needed to run fastapi tests
python-wheel))
python-setuptools-scm
python-uvicorn))
(inputs
;; [optional]
;; Pandera comes with a lot of extras. We test as many as possible, but do
;; not include all of them in the propagated-inputs. Currently, we have to
;; skip the pyspark and io tests due to missing packages python-pyspark
;; and python-frictionless.
(list python-dask
python-distributed
python-geopandas
python-hypothesis
;; python-ibis-framework ;missing from Guix
python-modin
python-numpy
python-pandas
;; python-polars ;missing from Guix
;; python-pyspark ;missing from Guix
;; python-ray ;missing from Guix
python-scipy
python-shapely))
(propagated-inputs
(list python-packaging
python-pydantic-2
python-typeguard
python-typing-extensions
python-typing-inspect))
(home-page "https://github.com/unionai-oss/pandera")
(synopsis "Perform data validation on dataframe-like objects")
(description