Merge branch 'master' into staging

This commit is contained in:
Marius Bakke 2018-03-01 18:04:12 +01:00
commit 86990eeda2
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97 changed files with 5394 additions and 2039 deletions

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@ -448,14 +448,14 @@ instead of @command{python3}.")))
(define-public python-psutil
(package
(name "python-psutil")
(version "4.3.0")
(version "5.4.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "psutil" version))
(sha256
(base32
"1w4r09fvn6kd80m5mx4ws1wz100brkaq6hzzpwrns8cgjzjpl6c6"))))
"063v69x7spyclyaxrd3gmzj3p16q5ayg97xqhwb1kyn22a9pwip2"))))
(build-system python-build-system)
(arguments
;; FIXME: some tests does not return and times out.
@ -470,10 +470,16 @@ limiting process resources and management of running processes. It implements
many functionalities offered by command line tools such as: ps, top, lsof,
netstat, ifconfig, who, df, kill, free, nice, ionice, iostat, iotop, uptime,
pidof, tty, taskset, pmap.")
(properties `((python2-variant . ,(delay python2-psutil))))
(license license:bsd-3)))
(define-public python2-psutil
(package-with-python2 python-psutil))
(let ((base (package-with-python2 (strip-python2-variant python-psutil))))
(package
(inherit base)
(propagated-inputs
`(("python2-enum34" ,python2-enum34) ;optional
,@(package-propagated-inputs base))))))
(define-public python-shapely
(package
@ -1386,26 +1392,15 @@ backported for previous versions of Python from 2.4 to 3.3.")
(define-public python-parse-type
(package
(name "python-parse-type")
(version "0.3.4")
(version "0.4.2")
(source
(origin
(method url-fetch)
(uri (string-append "https://pypi.python.org/packages/source/p/"
"parse_type/parse_type-" version ".tar.gz"))
(uri (pypi-uri "parse_type" version))
(sha256
(base32
"0iv1c34npr4iynwpgv1vkjx9rjd18a85ir8c01gc5f7wp8iv7l1x"))))
"0g3b6gsdwnm8dpkh2vn34q6dzxm9gl908ggyzcv31n9xbp3vv5pm"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'patch-tests
(lambda _
(substitute* "tests/test_parse_type_parse.py"
;; Newer Python versions don't have the problem this test tests.
(("self[.]assertRaises[(]parse.TooManyFields, p.parse, ''[)]")
""))
#t)))))
(propagated-inputs
`(("python-six" ,python-six)
("python-parse" ,python-parse)))
@ -1431,21 +1426,20 @@ backported for previous versions of Python from 2.4 to 3.3.")
(define-public python-parse
(package
(name "python-parse")
(version "1.6.6")
(version "1.8.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "parse" version))
(sha256
(base32
"0y31i3mwgv35qn0kzzjn9q8jqfdqmbi6sr6yfvn8rq4lqjm5lhvi"))
(patches (search-patches "python-parse-too-many-fields.patch"))))
"1lj9v1q4imszyhvipb6drsm3xdl35nan011mqxxas1yaypixsj40"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(replace 'check
(lambda _ (zero? (system* "python" "test_parse.py")))))))
(lambda _ (invoke "python" "test_parse.py"))))))
(home-page "https://github.com/r1chardj0n3s/parse")
(synopsis "Parse strings")
(description
@ -1512,19 +1506,17 @@ software.")
(define-public python-extras
(package
(name "python-extras")
(version "0.0.3")
(version "1.0.0")
(source
(origin
(method url-fetch)
(uri (string-append
"https://pypi.python.org/packages/source/e/extras/extras-"
version ".tar.gz"))
(uri (pypi-uri "extras" version))
(sha256
(base32
"1h7zx4dfyclalg0fqnfjijpn0f793a9mx8sy3b27gd31nr6dhq3s"))))
"0khvm08rcwm62wc47j8niyl6h13f8w51c8669ifivjdr23g3cbhk"))))
(build-system python-build-system)
(arguments
;; error in setup.cfg: command 'test' has no such option 'buffer'
;; FIXME: Circular dependency on testtools.
'(#:tests? #f))
(home-page "https://github.com/testing-cabal/extras")
(synopsis "Useful extensions to the Python standard library")
@ -1701,15 +1693,15 @@ code introspection, and logging.")
(propagated-inputs
`(("git" ,git))) ;; pbr actually uses the "git" binary.
(native-inputs
`(("python-fixtures" ,python-fixtures)
`(("python-fixtures" ,python-fixtures-bootstrap)
;; discover, coverage, hacking, subunit
("python-mock" ,python-mock)
("python-six" ,python-six)
("python-sphinx" ,python-sphinx)
("python-testrepository" ,python-testrepository)
("python-testresources" ,python-testresources)
("python-testscenarios" ,python-testscenarios)
("python-testtools" ,python-testtools)
("python-testrepository" ,python-testrepository-bootstrap)
("python-testresources" ,python-testresources-bootstrap)
("python-testscenarios" ,python-testscenarios-bootstrap)
("python-testtools" ,python-testtools-bootstrap)
("python-virtualenv" ,python-virtualenv)))
(synopsis "Enhance the default behavior of Pythons setuptools")
(description
@ -2426,7 +2418,17 @@ sources.")
`(("python-pytest" ,python-pytest)
("imagemagick" ,imagemagick) ; for "convert"
,@(package-native-inputs python-sphinx)))
(properties '())))
(properties `((python2-variant . ,(delay python2-sphinx-1.6))))))
(define-public python2-sphinx-1.6
(let ((base (package-with-python2 (strip-python2-variant python-sphinx-1.6))))
(package
(inherit base)
(propagated-inputs
`(("python2-typing" ,python2-typing)
,@(package-propagated-inputs base)))
(native-inputs `(("python2-enum34" ,python2-enum34)
,@(package-native-inputs base))))))
(define-public python-sphinx-1.5.3
(package
@ -4282,15 +4284,14 @@ them as the version argument or in a SCM managed file.")
(define-public python-pathpy
(package
(name "python-pathpy")
(version "8.1.1")
(version "11.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://pypi.python.org/packages/source/p/"
"path.py/path.py-" version ".tar.gz"))
(uri (pypi-uri "path.py" version))
(sha256
(base32 "1p8s1l2vfkqhqxdhqlj0g1jjw4f1as2frr35sjcpjjpd5a89y41f"))))
(outputs '("out" "doc"))
(base32 "12s84maimiz61980q065rjgi8ang6xw2wwm64m0lmfks51dlw4qn"))))
;; (outputs '("out" "doc"))
(build-system python-build-system)
(propagated-inputs
`(("python-appdirs" ,python-appdirs)))
@ -4301,22 +4302,24 @@ them as the version argument or in a SCM managed file.")
("python-pytest" ,python-pytest)
("python-pytest-runner" ,python-pytest-runner)))
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'build 'build-doc
(lambda _
(setenv "LANG" "en_US.UTF-8")
(zero? (system* "python" "setup.py" "build_sphinx"))))
(add-after 'install 'install-doc
(lambda* (#:key outputs #:allow-other-keys)
(let* ((data (string-append (assoc-ref outputs "doc") "/share"))
(doc (string-append data "/doc/" ,name "-" ,version))
(html (string-append doc "/html")))
(mkdir-p html)
(for-each (lambda (file)
(copy-file file (string-append doc "/" file)))
'("README.rst" "CHANGES.rst"))
(copy-recursively "build/sphinx/html" html)))))))
;; FIXME: Documentation and tests require "jaraco.packaging".
`(#:tests? #f))
;; #:phases
;; (modify-phases %standard-phases
;; (add-after 'build 'build-doc
;; (lambda _
;; (setenv "LANG" "en_US.UTF-8")
;; (zero? (system* "python" "setup.py" "build_sphinx"))))
;; (add-after 'install 'install-doc
;; (lambda* (#:key outputs #:allow-other-keys)
;; (let* ((data (string-append (assoc-ref outputs "doc") "/share"))
;; (doc (string-append data "/doc/" ,name "-" ,version))
;; (html (string-append doc "/html")))
;; (mkdir-p html)
;; (for-each (lambda (file)
;; (copy-file file (string-append doc "/" file)))
;; '("README.rst" "CHANGES.rst"))
;; (copy-recursively "build/sphinx/html" html)))))))
(home-page "https://github.com/jaraco/path.py")
(synopsis "Python module wrapper for built-in os.path")
(description
@ -4507,13 +4510,13 @@ installing @code{kernelspec}s for use with Jupyter frontends.")
(define-public python-ipython
(package
(name "python-ipython")
(version "5.3.0")
(version "5.5.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "ipython" version ".tar.gz"))
(sha256
(base32 "079wyjir4a9qx6kvx096b1asm63djbidk65z3ykcbnlngmg62pmz"))))
(base32 "03qmzpfy00if10i9k8fjkam1s4xg22j73f933x5d228z9n4rwik6"))))
(build-system python-build-system)
(outputs '("out" "doc"))
(propagated-inputs
@ -4773,7 +4776,7 @@ toolkit. Use it to build trees of widgets.")
(synopsis "Python bindings for D-bus")
(description "python-dbus provides bindings for libdbus, the reference
implementation of D-Bus.")
(home-page "http://www.freedesktop.org/wiki/Software/DBusBindings/")
(home-page "https://www.freedesktop.org/wiki/Software/DBusBindings/")
(license license:expat)))
(define-public python2-dbus
@ -4859,20 +4862,16 @@ converts incoming documents to Unicode and outgoing documents to UTF-8.")
(define-public python-netifaces
(package
(name "python-netifaces")
(version "0.10.4")
(version "0.10.6")
(source
(origin
(method url-fetch)
(uri (string-append
"https://pypi.python.org/packages/source/n/netifaces/netifaces-"
version
".tar.gz"))
(uri (pypi-uri "netifaces" version))
(sha256
(base32
"1plw237a4zib4z8s62g0mrs8gm3kjfrp5sxh6bbk9nl3rdls2mln"))))
"1q7bi5k2r955rlcpspx4salvkkpk28jky67fjbpz2dkdycisak8c"))))
(build-system python-build-system)
(home-page
"https://bitbucket.org/al45tair/netifaces")
(home-page "https://github.com/al45tair/netifaces")
(synopsis
"Python module for portable network interface information")
(description
@ -5835,21 +5834,59 @@ should be stored on various operating systems.")
(define-public python-msgpack
(package
(name "python-msgpack")
(version "0.4.8")
(version "0.5.6")
(source (origin
(method url-fetch)
(uri (pypi-uri "msgpack-python" version))
(uri (pypi-uri "msgpack" version))
(sha256
(base32
"11pqk5braa6wndpnr1dhg64js82vjgxnm0lzy73rwl831zgijaqs"))))
"1hz2dba1nvvn52afg34liijsm7kn65cmn06dl0xbwld6bb4cis0f"))))
(build-system python-build-system)
(arguments
`(#:modules ((guix build utils)
(guix build python-build-system)
(ice-9 ftw)
(srfi srfi-1)
(srfi srfi-26))
#:phases
(modify-phases %standard-phases
(replace 'check
(lambda _
(let ((cwd (getcwd)))
(setenv "PYTHONPATH"
(string-append cwd "/build/"
(find (cut string-prefix? "lib" <>)
(scandir (string-append cwd "/build")))
":"
(getenv "PYTHONPATH")))
(invoke "pytest" "-v" "test")))))))
(native-inputs
`(("python-pytest" ,python-pytest)))
(synopsis "MessagePack (de)serializer")
(description "MessagePack is a fast, compact binary serialization format,
suitable for similar data to JSON. This package provides CPython bindings for
reading and writing MessagePack data.")
(home-page "https://pypi.python.org/pypi/msgpack-python/")
(home-page "https://pypi.python.org/pypi/msgpack/")
(license license:asl2.0)))
;; This msgpack library's name changed from "python-msgpack" to "msgpack" with
;; release 0.5. Some packages like borg still call it by the old name for now.
;; <https://bugs.gnu.org/30662>
(define-public python-msgpack-transitional
(package
(inherit python-msgpack)
(arguments
(substitute-keyword-arguments (package-arguments python-msgpack)
((#:phases phases)
`(modify-phases ,phases
(add-after 'unpack 'configure-transitional
(lambda _
;; Keep using the old name.
(substitute* "setup.py"
(("TRANSITIONAL = False")
"TRANSITIONAL = 1"))
#t))))))))
(define-public python2-msgpack
(package-with-python2 python-msgpack))
@ -5879,14 +5916,14 @@ and MAC network addresses.")
(define-public python-wrapt
(package
(name "python-wrapt")
(version "1.10.8")
(version "1.10.11")
(source
(origin
(method url-fetch)
(uri (pypi-uri "wrapt" version))
(sha256
(base32
"0wrcm1mydvfivbkzz0h81ygzdchnscshi6xvy5n3r21r9s0px8af"))))
"1ip3dwib39xhp79kblskgvz3fjzcwxgx3fs3ahdixhpjg7a61mfl"))))
(build-system python-build-system)
(arguments
;; Tests are not included in the tarball, they are only available in the
@ -8072,21 +8109,22 @@ anymore.")
(define-public python2-pathlib2
(package
(name "python2-pathlib2")
(version "2.1.0")
(version "2.3.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "pathlib2" version))
(sha256
(base32
"0p050msg5c8d0kadv702jnfshaxrb0il765cpkgnhn6mq5hakcyy"))))
"1cx5gs2v9j2vnzmcrbq5l8fq2mwrr1h6pyf1sjdji2w1bavm09fk"))))
(build-system python-build-system)
;; We only need the the Python 2 variant, since for Python 3 our minimum
;; version is 3.4 which already includes this package as part of the
;; standard library.
(arguments
`(#:python ,python-2))
(native-inputs
`(("python2-six" ,python2-six)))
(propagated-inputs
`(("python2-scandir" ,python2-scandir)
("python2-six" ,python2-six)))
(home-page "https://pypi.python.org/pypi/pathlib2/")
(synopsis "Object-oriented file system paths - backport of standard
pathlib module")
@ -11093,14 +11131,19 @@ It supports both normal and Unicode strings.")
(define-public python-scandir
(package
(name "python-scandir")
(version "1.4")
(version "1.7")
(source
(origin
(method url-fetch)
(uri (pypi-uri "scandir" version))
(sha256
(base32 "0yjrgp0mxp3d8bjkq2m1ac2ys8n76wykksvgyjrnil9gr3fx7a5d"))))
(base32 "0gbnhjzg42rj87ljv9kb648rfxph69ly3c8r9841dxy4d7l5pmdj"))))
(build-system python-build-system)
(arguments
`(#:phases (modify-phases %standard-phases
(replace 'check
(lambda _
(invoke "python" "test/run_tests.py"))))))
(home-page "https://github.com/benhoyt/scandir")
(synopsis "Directory iteration function")
(description
@ -11108,7 +11151,9 @@ It supports both normal and Unicode strings.")
returning a list of bare filenames, it yields DirEntry objects that include
file type and stat information along with the name. Using scandir() increases
the speed of os.walk() by 2-20 times (depending on the platform and file
system) by avoiding unnecessary calls to os.stat() in most cases.")
system) by avoiding unnecessary calls to os.stat() in most cases.
This package is part of the Python standard library since version 3.5.")
(license license:bsd-3)))
(define-public python2-scandir
@ -11495,6 +11540,48 @@ applying JSON Patches according to RFC 6902.")
(define-public python2-jsonpatch-0.4
(package-with-python2 python-jsonpatch-0.4))
(define-public python-rfc3986
(package
(name "python-rfc3986")
(version "1.1.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "rfc3986" version))
(sha256
(base32
"06wlmysw83f75ff84zr1yr6n0shvc2xn1n1sb4iwzqap9hf5fn44"))))
(build-system python-build-system)
(arguments
`(#:modules ((guix build utils)
(guix build python-build-system)
(ice-9 ftw)
(srfi srfi-1)
(srfi srfi-26))
#:phases
(modify-phases %standard-phases
(replace 'check
(lambda _
(let ((cwd (getcwd)))
(setenv "PYTHONPATH"
(string-append cwd "/build/"
(find (cut string-prefix? "lib" <>)
(scandir (string-append cwd "/build")))
":"
(getenv "PYTHONPATH")))
(invoke "pytest" "-v")))))))
(native-inputs
`(("python-pytest" ,python-pytest)))
(home-page "https://rfc3986.readthedocs.io/")
(synopsis "Parse and validate URI references")
(description
"@code{rfc3986} is a Python implementation of RFC@tie{}3986 including
validation and authority parsing. This module also supports RFC@tie{}6874
which adds support for zone identifiers to IPv6 addresses.")
(license license:asl2.0)))
(define-public python2-rfc3986
(package-with-python2 python-rfc3986))
(define-public python-rfc3987
(package
(name "python-rfc3987")
@ -12841,3 +12928,25 @@ interpreter. bpython's main features are
(("^(\\s+'bpython)(-\\S+)?(\\s+=.*',?)\\s*?$" _ name sub rest)
(string-append name "2" (or sub "") rest "\n")))
#t))))))))
(define-public python-pyinotify
(package
(name "python-pyinotify")
(version "0.9.6")
(source (origin
(method url-fetch)
(uri (pypi-uri "pyinotify" version))
(sha256
(base32
"1x3i9wmzw33fpkis203alygfnrkcmq9w1aydcm887jh6frfqm6cw"))))
(build-system python-build-system)
(arguments `(#:tests? #f)) ;no tests
(home-page "https://github.com/seb-m/pyinotify")
(synopsis "Python library for monitoring inotify events")
(description
"@code{pyinotify} provides a Python interface for monitoring
filesystem events on Linux.")
(license license:expat)))
(define-public python2-pyinotify
(package-with-python2 python-pyinotify))