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gnu: packages/astronomy: Sort variables.
* gnu/packages/astronomy.scm: (python-asdf-coordinates-schemas, python-poliastro, python-pynbody, python-radio-beam): Sort variables alphabetically. Change-Id: Ibbd5f7cc8bb223e183e089f9e759eb15ad93691f
This commit is contained in:
Sharlatan Hellseher
parent
94e8fe6a16
commit
86fab16adb
1 changed files with 247 additions and 247 deletions
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@ -2126,6 +2126,38 @@ support for reading and writing various compression algorithms including:
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@url{http://facebook.github.io/zstd/,Zstandard}.")
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(license license:bsd-3))))
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(define-public python-asdf-coordinates-schemas
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(hidden-package
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(package
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(name "python-asdf-coordinates-schemas")
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(version "0.4.0")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "asdf_coordinates_schemas" version))
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(sha256
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(base32 "1i5w1v74b84ygbd9pw9cs35bjaqs35f5iavazhjpbycqr1pf8rvh"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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||||
#:test-flags
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#~(list "--numprocesses" (number->string (parallel-job-count)))))
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(native-inputs
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(list python-pytest
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python-pytest-xdist
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python-setuptools-next
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python-setuptools-scm
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python-wheel))
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(propagated-inputs
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(list python-asdf))
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(home-page "https://github.com/asdf-format/asdf-coordinates-schemas")
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(synopsis "ASDF coordinates schemas")
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(description
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"This package provides ASDF schemas for validating coordinates tags.
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Users should not need to install this directly; instead, install an
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implementation package such as asdf-astropy.")
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(license license:bsd-3))))
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(define-public python-asdf-standard
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(package
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(name "python-asdf-standard")
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@ -5815,6 +5847,96 @@ binned galaxy positions or shear) in cylindrical projection, but its core
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functionality is more general.")
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(license license:bsd-3)))
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;; XXX: The project is archived, maintained fork is available see
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;; <https://github.com/poliastro/poliastro/issues/1640>.
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;; Maintained fork <https://github.com/pleiszenburg/hapsira>.
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(define-public python-poliastro
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(package
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(name "python-poliastro")
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(version "0.17.0")
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(source
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(origin
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;; PyPi tarball lacks tests.
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/poliastro/poliastro")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "1iclyjp0cvm6hp5qf4fzklszxvhj3idkxgb6a9h7xzg9bf5j5gi2"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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#:test-flags
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#~(list "-m" "not remote_data"
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;; TODO: Review failing tests later when any upstream
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;; suggestions are provided:
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;; https://github.com/poliastro/poliastro/issues/1618
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"--ignore=tests/test_czml.py"
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"-k" (string-append
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;; This fails with "ufunc 'isfinite' not
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;; supported for the input types"
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"not test_porkchop_plotting"
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" and not test_maneuver_constructor_raises_error_if_invalid_delta_v"))
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#:phases
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#~(modify-phases %standard-phases
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(add-after 'unpack 'relax-requirements
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(lambda _
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(substitute* "pyproject.toml"
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(("5.0,<6") "5.0,<7"))))
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(add-after 'unpack 'matplotlib-compatibility
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(lambda _
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(substitute* "src/poliastro/plotting/static.py"
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(("import numpy as np.*" m)
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(string-append m "\
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import itertools\n"))
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(("( +)self._ax = ax.*" m indent)
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(string-append m indent
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"\
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self.colors = itertools.cycle(plt.rcParams[\"axes.prop_cycle\"].by_key()[\"color\"])\n"))
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(("color = next\\(self._ax._get_lines.prop_cycler\\)\\[\"color\"\\]")
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"color = next(self.colors)"))))
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;; NOTE: Tests take about 7-10 minutes to pass.
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(add-before 'check 'prepare-test-environment
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(lambda _
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(setenv "HOME" "/tmp"))))))
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(native-inputs
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(list python-coverage
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python-hypothesis
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python-mypy
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python-flit-core
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python-pytest
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python-pytest-cov
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python-pytest-doctestplus
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python-pytest-mpl
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python-pytest-mypy))
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(propagated-inputs
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(list python-astropy-6
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python-astroquery
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python-czml3
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python-jplephem
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python-matplotlib
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python-numba
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python-numpy
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python-pandas
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python-plotly
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python-pyerfa
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python-scipy))
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(home-page "https://www.poliastro.space/")
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(synopsis "Astrodynamics in Python")
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(description
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"POLIASTRO is a Python library for interactive Astrodynamics and Orbital
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Mechanics, with a focus on ease of use, speed, and quick visualization. It
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provides a simple and intuitive API, and handles physical quantities with
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units.
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Some features include orbit propagation, solution of the Lambert's problem,
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conversion between position and velocity vectors and classical orbital
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elements and orbit plotting, among others. It focuses on interplanetary
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applications, but can also be used to analyze artificial satellites in
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Low-Earth Orbit (LEO).")
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(license license:expat)))
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(define-public python-poppy
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(package
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(name "python-poppy")
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@ -6095,6 +6217,94 @@ also transltes halo properties (mass, concentration, redshift, etc) into
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angular units for lensing computations with lenstronomy.")
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(license license:expat)))
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(define-public python-pynbody
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(package
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(name "python-pynbody")
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(version "1.6.0.post0")
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(source
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(origin
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(method git-fetch) ;PyPi doesn't have not prebuit version.
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(uri (git-reference
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(url "https://github.com/pynbody/pynbody")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0rl9ais4yc6kdijq1il4vi3mplp7z6bcih4x55axhan5n3n7riwi"))
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(modules '((guix build utils)))
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(snippet
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;; Symlink goes to not existing directory.
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#~(for-each delete-file '("docs/testdata"
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"docs/tutorials/example_code/testdata")))))
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(build-system pyproject-build-system)
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(arguments
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(list #:test-flags #~(list
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;; Disable tests which need to download additional
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;; 1.0GiB+ of test data archive from
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;; http://star.ucl.ac.uk/~app/testdata.tar.gz
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;; https://github.com/pynbody/pynbody/blob/ \
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;; f4bd482dc47532831b3ec115c7cb07149d61bfc5/ \
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;; .github/workflows/build-test.yaml#L41
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;; See <https://github.com/pynbody/pynbody/issues/778>
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"--ignore=tests/copy_on_access_test.py"
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"--ignore=tests/gravity_test.py"
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"--ignore=tests/adaptahop_test.py"
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"--ignore=tests/ahf_halos_test.py"
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"--ignore=tests/array_test.py"
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"--ignore=tests/bridge_test.py"
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"--ignore=tests/family_test.py"
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"--ignore=tests/partial_tipsy_test.py"
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"--ignore=tests/snapshot_test.py"
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"--ignore=tests/test_profile.py"
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"--ignore=tests/gadget_test.py"
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"--ignore=tests/gadgethdf_test.py"
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"--ignore=tests/grafic_test.py"
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"--ignore=tests/halotools_test.py"
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"--ignore=tests/nchilada_test.py"
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"--ignore=tests/ramses_new_ptcl_format_test.py"
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"--ignore=tests/ramses_test.py"
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"--ignore=tests/rockstar_test.py"
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"--ignore=tests/sph_image_test.py"
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"--ignore=tests/sph_smooth_test.py"
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"--ignore=tests/subfind_test.py"
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"--ignore=tests/subfindhdf_gadget4_test.py"
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"--ignore=tests/tipsy_test.py"
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"-k"
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(string-append
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"not test_div_curl_smoothing"
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" and not test_float_kd"
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" and not test_kd_delete"
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" and not test_kd_issue_88"
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" and not test_kdtree_from_existing_kdtree"
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" and not test_kdtree_shared_mem"
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" and not test_neighbour_list"
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" and not test_particles_in_sphere"
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" and not test_periodic_smoothing"
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" and not test_smooth"
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" and not test_smooth_WendlandC2"))
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#:phases
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#~(modify-phases %standard-phases
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(add-before 'build 'set-compiler
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(lambda _
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(setenv "CC" #$(cc-for-target)))))))
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(native-inputs
|
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(list python-cython
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python-pandas
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python-pytest
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python-setuptools
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python-wheel))
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(propagated-inputs
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(list python-h5py
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python-matplotlib
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python-numpy
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python-posix-ipc
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python-scipy))
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(home-page "https://pynbody.github.io/pynbody/index.html")
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(synopsis "Light-weight astronomical N-body/SPH analysis for python")
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(description "@code{Pynbody} is an analysis framework for N-body and hydrodynamic
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astrophysical simulations supporting PKDGRAV/Gasoline, Gadget, Gadget4/Arepo,
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N-Chilada and RAMSES AMR outputs.")
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(license license:gpl3+)))
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(define-public python-pyregion
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(package
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(name "python-pyregion")
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@ -6497,6 +6707,43 @@ format, which are used by ASDF to serialize and deserialize data for the Nancy
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Grace Roman Space Telescope.")
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(license license:bsd-3)))
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(define-public python-radio-beam
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(package
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(name "python-radio-beam")
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(version "0.3.9")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "radio_beam" version))
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(sha256
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(base32 "0i76hj6wyijbpxx7n1sm12f0qqw15srk6ikq2cr589lvrixylpwv"))))
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(build-system pyproject-build-system)
|
||||
(native-inputs
|
||||
(list python-pytest-astropy
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python-setuptools
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python-setuptools-scm
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python-wheel))
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||||
(propagated-inputs
|
||||
(list python-astropy
|
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python-matplotlib
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||||
python-numpy
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python-scipy))
|
||||
(home-page "https://radio-beam.readthedocs.io/en/latest/")
|
||||
(synopsis "Operations for radio astronomy beams with Astropy")
|
||||
(description
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||||
"Radio Beam is a simple toolkit for reading beam information from FITS
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headers and manipulating beams.
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Some example applications include:
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@itemize
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||||
@item Convolution and deconvolution
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@item Unit conversion (Jy to/from K)
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@item Handle sets of beams for spectral cubes with varying resolution between
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channels
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||||
@item Find the smallest common beam from a set of beams
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||||
@item Add the beam shape to a matplotlib plot
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@end itemize")
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(license license:bsd-3)))
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(define-public python-radiospectra
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(package
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(name "python-radiospectra")
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||||
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@ -7314,96 +7561,6 @@ instruments.")
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(license (list license:bsd-3 ; licenses/LICENSE.rst, same as python-astropy
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license:expat)))) ; licenses/KOSMOS_LICENSE
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|
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;; XXX: The project is archived, maintained fork is available see
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;; <https://github.com/poliastro/poliastro/issues/1640>.
|
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;; Maintained fork <https://github.com/pleiszenburg/hapsira>.
|
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(define-public python-poliastro
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(package
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(name "python-poliastro")
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(version "0.17.0")
|
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(source
|
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(origin
|
||||
;; PyPi tarball lacks tests.
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/poliastro/poliastro")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "1iclyjp0cvm6hp5qf4fzklszxvhj3idkxgb6a9h7xzg9bf5j5gi2"))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
|
||||
(list
|
||||
#:test-flags
|
||||
#~(list "-m" "not remote_data"
|
||||
;; TODO: Review failing tests later when any upstream
|
||||
;; suggestions are provided:
|
||||
;; https://github.com/poliastro/poliastro/issues/1618
|
||||
"--ignore=tests/test_czml.py"
|
||||
"-k" (string-append
|
||||
;; This fails with "ufunc 'isfinite' not
|
||||
;; supported for the input types"
|
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"not test_porkchop_plotting"
|
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" and not test_maneuver_constructor_raises_error_if_invalid_delta_v"))
|
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#:phases
|
||||
#~(modify-phases %standard-phases
|
||||
(add-after 'unpack 'relax-requirements
|
||||
(lambda _
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||||
(substitute* "pyproject.toml"
|
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(("5.0,<6") "5.0,<7"))))
|
||||
(add-after 'unpack 'matplotlib-compatibility
|
||||
(lambda _
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(substitute* "src/poliastro/plotting/static.py"
|
||||
(("import numpy as np.*" m)
|
||||
(string-append m "\
|
||||
import itertools\n"))
|
||||
(("( +)self._ax = ax.*" m indent)
|
||||
(string-append m indent
|
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"\
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self.colors = itertools.cycle(plt.rcParams[\"axes.prop_cycle\"].by_key()[\"color\"])\n"))
|
||||
(("color = next\\(self._ax._get_lines.prop_cycler\\)\\[\"color\"\\]")
|
||||
"color = next(self.colors)"))))
|
||||
;; NOTE: Tests take about 7-10 minutes to pass.
|
||||
(add-before 'check 'prepare-test-environment
|
||||
(lambda _
|
||||
(setenv "HOME" "/tmp"))))))
|
||||
(native-inputs
|
||||
(list python-coverage
|
||||
python-hypothesis
|
||||
python-mypy
|
||||
python-flit-core
|
||||
python-pytest
|
||||
python-pytest-cov
|
||||
python-pytest-doctestplus
|
||||
python-pytest-mpl
|
||||
python-pytest-mypy))
|
||||
(propagated-inputs
|
||||
(list python-astropy-6
|
||||
python-astroquery
|
||||
python-czml3
|
||||
python-jplephem
|
||||
python-matplotlib
|
||||
python-numba
|
||||
python-numpy
|
||||
python-pandas
|
||||
python-plotly
|
||||
python-pyerfa
|
||||
python-scipy))
|
||||
(home-page "https://www.poliastro.space/")
|
||||
(synopsis "Astrodynamics in Python")
|
||||
(description
|
||||
"POLIASTRO is a Python library for interactive Astrodynamics and Orbital
|
||||
Mechanics, with a focus on ease of use, speed, and quick visualization. It
|
||||
provides a simple and intuitive API, and handles physical quantities with
|
||||
units.
|
||||
|
||||
Some features include orbit propagation, solution of the Lambert's problem,
|
||||
conversion between position and velocity vectors and classical orbital
|
||||
elements and orbit plotting, among others. It focuses on interplanetary
|
||||
applications, but can also be used to analyze artificial satellites in
|
||||
Low-Earth Orbit (LEO).")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-pyavm
|
||||
(package
|
||||
(name "python-pyavm")
|
||||
|
|
@ -8023,94 +8180,6 @@ science instruments plus the fine guidance sensor, including both direct
|
|||
imaging, coronagraphic, and spectroscopic modes.")
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||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-pynbody
|
||||
(package
|
||||
(name "python-pynbody")
|
||||
(version "1.6.0.post0")
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch) ;PyPi doesn't have not prebuit version.
|
||||
(uri (git-reference
|
||||
(url "https://github.com/pynbody/pynbody")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "0rl9ais4yc6kdijq1il4vi3mplp7z6bcih4x55axhan5n3n7riwi"))
|
||||
(modules '((guix build utils)))
|
||||
(snippet
|
||||
;; Symlink goes to not existing directory.
|
||||
#~(for-each delete-file '("docs/testdata"
|
||||
"docs/tutorials/example_code/testdata")))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
|
||||
(list #:test-flags #~(list
|
||||
;; Disable tests which need to download additional
|
||||
;; 1.0GiB+ of test data archive from
|
||||
;; http://star.ucl.ac.uk/~app/testdata.tar.gz
|
||||
;; https://github.com/pynbody/pynbody/blob/ \
|
||||
;; f4bd482dc47532831b3ec115c7cb07149d61bfc5/ \
|
||||
;; .github/workflows/build-test.yaml#L41
|
||||
;; See <https://github.com/pynbody/pynbody/issues/778>
|
||||
"--ignore=tests/copy_on_access_test.py"
|
||||
"--ignore=tests/gravity_test.py"
|
||||
"--ignore=tests/adaptahop_test.py"
|
||||
"--ignore=tests/ahf_halos_test.py"
|
||||
"--ignore=tests/array_test.py"
|
||||
"--ignore=tests/bridge_test.py"
|
||||
"--ignore=tests/family_test.py"
|
||||
"--ignore=tests/partial_tipsy_test.py"
|
||||
"--ignore=tests/snapshot_test.py"
|
||||
"--ignore=tests/test_profile.py"
|
||||
"--ignore=tests/gadget_test.py"
|
||||
"--ignore=tests/gadgethdf_test.py"
|
||||
"--ignore=tests/grafic_test.py"
|
||||
"--ignore=tests/halotools_test.py"
|
||||
"--ignore=tests/nchilada_test.py"
|
||||
"--ignore=tests/ramses_new_ptcl_format_test.py"
|
||||
"--ignore=tests/ramses_test.py"
|
||||
"--ignore=tests/rockstar_test.py"
|
||||
"--ignore=tests/sph_image_test.py"
|
||||
"--ignore=tests/sph_smooth_test.py"
|
||||
"--ignore=tests/subfind_test.py"
|
||||
"--ignore=tests/subfindhdf_gadget4_test.py"
|
||||
"--ignore=tests/tipsy_test.py"
|
||||
"-k"
|
||||
(string-append
|
||||
"not test_div_curl_smoothing"
|
||||
" and not test_float_kd"
|
||||
" and not test_kd_delete"
|
||||
" and not test_kd_issue_88"
|
||||
" and not test_kdtree_from_existing_kdtree"
|
||||
" and not test_kdtree_shared_mem"
|
||||
" and not test_neighbour_list"
|
||||
" and not test_particles_in_sphere"
|
||||
" and not test_periodic_smoothing"
|
||||
" and not test_smooth"
|
||||
" and not test_smooth_WendlandC2"))
|
||||
#:phases
|
||||
#~(modify-phases %standard-phases
|
||||
(add-before 'build 'set-compiler
|
||||
(lambda _
|
||||
(setenv "CC" #$(cc-for-target)))))))
|
||||
(native-inputs
|
||||
(list python-cython
|
||||
python-pandas
|
||||
python-pytest
|
||||
python-setuptools
|
||||
python-wheel))
|
||||
(propagated-inputs
|
||||
(list python-h5py
|
||||
python-matplotlib
|
||||
python-numpy
|
||||
python-posix-ipc
|
||||
python-scipy))
|
||||
(home-page "https://pynbody.github.io/pynbody/index.html")
|
||||
(synopsis "Light-weight astronomical N-body/SPH analysis for python")
|
||||
(description "@code{Pynbody} is an analysis framework for N-body and hydrodynamic
|
||||
astrophysical simulations supporting PKDGRAV/Gasoline, Gadget, Gadget4/Arepo,
|
||||
N-Chilada and RAMSES AMR outputs.")
|
||||
(license license:gpl3+)))
|
||||
|
||||
(define-public python-pysynphot
|
||||
;; XXX: 2.0.0 was released in 2021 there are a lot of changes since that
|
||||
;; time and it failed to build with python-astropy 6.0.0, use the latest
|
||||
|
|
@ -8163,38 +8232,6 @@ photometric systems are available, and users can incorporate their own filters,
|
|||
spectra, and data.")
|
||||
(license license:bsd-3))))
|
||||
|
||||
(define-public python-asdf-coordinates-schemas
|
||||
(hidden-package
|
||||
(package
|
||||
(name "python-asdf-coordinates-schemas")
|
||||
(version "0.4.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "asdf_coordinates_schemas" version))
|
||||
(sha256
|
||||
(base32 "1i5w1v74b84ygbd9pw9cs35bjaqs35f5iavazhjpbycqr1pf8rvh"))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
|
||||
(list
|
||||
#:test-flags
|
||||
#~(list "--numprocesses" (number->string (parallel-job-count)))))
|
||||
(native-inputs
|
||||
(list python-pytest
|
||||
python-pytest-xdist
|
||||
python-setuptools-next
|
||||
python-setuptools-scm
|
||||
python-wheel))
|
||||
(propagated-inputs
|
||||
(list python-asdf))
|
||||
(home-page "https://github.com/asdf-format/asdf-coordinates-schemas")
|
||||
(synopsis "ASDF coordinates schemas")
|
||||
(description
|
||||
"This package provides ASDF schemas for validating coordinates tags.
|
||||
Users should not need to install this directly; instead, install an
|
||||
implementation package such as asdf-astropy.")
|
||||
(license license:bsd-3))))
|
||||
|
||||
(define-public python-asdf-fits-schemas
|
||||
(hidden-package
|
||||
;; This package was never released and has been archived. The schemas in
|
||||
|
|
@ -8236,43 +8273,6 @@ implementation package such as asdf-astropy.")
|
|||
"This package provides ASDF schemas for validating FITS tags.")
|
||||
(license license:bsd-3)))))
|
||||
|
||||
(define-public python-radio-beam
|
||||
(package
|
||||
(name "python-radio-beam")
|
||||
(version "0.3.9")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "radio_beam" version))
|
||||
(sha256
|
||||
(base32 "0i76hj6wyijbpxx7n1sm12f0qqw15srk6ikq2cr589lvrixylpwv"))))
|
||||
(build-system pyproject-build-system)
|
||||
(native-inputs
|
||||
(list python-pytest-astropy
|
||||
python-setuptools
|
||||
python-setuptools-scm
|
||||
python-wheel))
|
||||
(propagated-inputs
|
||||
(list python-astropy
|
||||
python-matplotlib
|
||||
python-numpy
|
||||
python-scipy))
|
||||
(home-page "https://radio-beam.readthedocs.io/en/latest/")
|
||||
(synopsis "Operations for radio astronomy beams with Astropy")
|
||||
(description
|
||||
"Radio Beam is a simple toolkit for reading beam information from FITS
|
||||
headers and manipulating beams.
|
||||
Some example applications include:
|
||||
@itemize
|
||||
@item Convolution and deconvolution
|
||||
@item Unit conversion (Jy to/from K)
|
||||
@item Handle sets of beams for spectral cubes with varying resolution between
|
||||
channels
|
||||
@item Find the smallest common beam from a set of beams
|
||||
@item Add the beam shape to a matplotlib plot
|
||||
@end itemize")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-roman-datamodels
|
||||
(package
|
||||
(name "python-roman-datamodels")
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue