mirror of
https://codeberg.org/guix/guix.git
synced 2025-10-02 02:15:12 +00:00
Merge branch 'master' into core-updates
Conflicts: gnu/local.mk gnu/packages/backup.scm gnu/packages/emacs-xyz.scm gnu/packages/guile.scm gnu/packages/lisp.scm gnu/packages/openldap.scm gnu/packages/package-management.scm gnu/packages/web.scm gnu/packages/xorg.scm
This commit is contained in:
Marius Bakke
commit
8bf8cd9b85
69 changed files with 6231 additions and 782 deletions
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@ -39,7 +39,7 @@
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;;; Copyright © 2017 Ben Sturmfels <ben@sturm.com.au>
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;;; Copyright © 2017, 2018, 2019 Mathieu Othacehe <m.othacehe@gmail.com>
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;;; Copyright © 2017 José Miguel Sánchez García <jmi2k@openmailbox.org>
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;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
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;;; Copyright © 2017, 2020 Roel Janssen <roel@gnu.org>
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;;; Copyright © 2017, 2018, 2019 Kei Kebreau <kkebreau@posteo.net>
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;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com>
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;;; Copyright © 2017 Muriithi Frederick Muriuki <fredmanglis@gmail.com>
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@ -413,16 +413,17 @@ data for video and audio files.")
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(define-public python-psutil
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(package
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(name "python-psutil")
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(version "5.6.5")
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(version "5.7.0")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "psutil" version))
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(sha256
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(base32 "0isil5jxwwd8awz54qk28rpgjg43i5l6yl70g40vxwa4r4m56lfh"))))
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(base32 "03jykdi3dgf1cdal9bv4fq9zjvzj9l9bs99gi5ar81sdl5nc2pk8"))))
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(build-system python-build-system)
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(arguments
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;; FIXME: some tests does not return and times out.
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;; FIXME: some tests do not return and time out. Some tests fail because
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;; some processes survive kill().
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'(#:tests? #f))
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(home-page "https://www.github.com/giampaolo/psutil")
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(synopsis "Library for retrieving information on running processes")
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@ -641,6 +642,30 @@ certificate returned by the server to which a connection has been established,
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and verifies that it matches the intended target hostname.")
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(license license:psfl)))
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(define-public python-bitarray
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(package
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(name "python-bitarray")
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(version "1.2.1")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "bitarray" version))
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(sha256
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(base32
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"1kxrlxfj9nrx512sfwifwl9z4v6ky3qschl0zmk3s3dvc3s7bmif"))))
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(build-system python-build-system)
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(home-page "https://github.com/ilanschnell/bitarray")
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(synopsis "Efficient arrays of booleans")
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(description "This package provides an object type which efficiently
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represents an array of booleans. Bitarrays are sequence types and behave very
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much like usual lists. Eight bits are represented by one byte in a contiguous
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block of memory. The user can select between two representations:
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little-endian and big-endian. All of the functionality is implemented in C.
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Methods for accessing the machine representation are provided. This can be
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useful when bit level access to binary files is required, such as portable
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bitmap image files. Also, when dealing with compressed data which uses
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variable bit length encoding, you may find this module useful.")
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(license license:psfl)))
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(define-public python-boolean.py
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(package
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(name "python-boolean.py")
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@ -3208,6 +3233,77 @@ reStructuredText.")
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(base32
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"0x22fs3pdmr42kvz6c654756wja305qv6cx1zbhwlagvxgr4xrji"))))))
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(define-public python-restructuredtext-lint
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(package
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(name "python-restructuredtext-lint")
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(version "1.3.0")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "restructuredtext-lint" version))
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(sha256
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(base32
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"026rdy5h82ng4vqxk8fnprii9d6qxf7hkygiv0a8afjvdlsxmcwp"))))
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(build-system python-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(delete 'check)
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(add-after 'install 'check
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(lambda* (#:key inputs outputs tests? #:allow-other-keys)
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(when tests?
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(add-installed-pythonpath inputs outputs)
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(invoke "nosetests" "-v"))
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#t)))))
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(propagated-inputs
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`(("python-docutils" ,python-docutils)))
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(native-inputs
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`(("python-nose" ,python-nose)))
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(home-page "https://github.com/twolfson/restructuredtext-lint")
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(synopsis "reStructuredText linter")
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(description "This package provides a linter for the reStructuredText
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format.")
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(license license:unlicense)))
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(define-public python-doc8
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(package
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(name "python-doc8")
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(version "0.8.0")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "doc8" version))
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(sha256
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(base32
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"0hw5w8mpgsp51qg8nnq28p7y1jiksvz7a0axnn5bkgss3af9zy1d"))))
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(build-system python-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(delete 'check)
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(add-after 'install 'check
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(lambda* (#:key inputs outputs tests? #:allow-other-keys)
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(when tests?
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(add-installed-pythonpath inputs outputs)
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(invoke "pytest" "-v"))
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#t)))))
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(propagated-inputs
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`(("python-chardet" ,python-chardet)
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("python-docutils" ,python-docutils)
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("python-restructuredtext-lint" ,python-restructuredtext-lint)
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("python-six" ,python-six)
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("python-stevedore" ,python-stevedore)))
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(native-inputs
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`(("python-testtools" ,python-testtools)
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("python-pytest" ,python-pytest)))
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(home-page "https://launchpad.net/doc8")
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(synopsis
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"Style checker for Sphinx (or other) RST documentation")
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(description
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"Doc8 is an opinionated style checker for reStructured Text and plain
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text styles of documentation.")
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(license license:asl2.0)))
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(define-public python-pygments
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(package
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(name "python-pygments")
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@ -4794,27 +4890,38 @@ toolkits.")
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three-way Venn diagrams in @code{matplotlib}.")
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(license license:expat)))
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(define-public python2-pysnptools
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(define-public python-pysnptools
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(package
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(name "python2-pysnptools")
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(version "0.3.13")
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(name "python-pysnptools")
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(version "0.4.11")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "pysnptools" version))
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(sha256
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(base32
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"0lnis5xsl7bi0hz4f7gbicahzi5zlxkc21nk3g374xv8fb5hb3qm"))))
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"0gxr0bjix307wvk0qh7vkafbxbzfpdmq0wlswpxyyaymy0fwcypv"))))
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(build-system python-build-system)
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(arguments
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`(#:python ,python-2 ; only Python 2.7 is supported
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#:tests? #f)) ; test files (e.g. examples/toydata.bim) not included
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`(#:tests? #f ; no test data are included
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#:phases
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(modify-phases %standard-phases
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(replace 'check
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(lambda* (#:key inputs outputs tests? #:allow-other-keys)
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(if tests?
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(begin
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(add-installed-pythonpath inputs outputs)
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(invoke "python3" "pysnptools/test.py"))
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#t))))))
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(propagated-inputs
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`(("python2-numpy" ,python2-numpy)
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("python2-scipy" ,python2-scipy)
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("python2-pandas" ,python2-pandas)))
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`(("python-dill" ,python-dill)
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("python-h5py" ,python-h5py)
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("python-numpy" ,python-numpy)
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("python-pandas" ,python-pandas)
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("python-psutil" ,python-psutil)
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("python-scipy" ,python-scipy)))
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(native-inputs
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`(("python2-cython" ,python2-cython)))
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`(("python-cython" ,python-cython)))
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(home-page "http://microsoftgenomics.github.io/PySnpTools/")
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(synopsis "Library for reading and manipulating genetic data")
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(description
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@ -4824,6 +4931,9 @@ those files. It can also efficiently manipulate ranges of integers using set
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operators such as union, intersection, and difference.")
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(license license:asl2.0)))
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(define-public python2-pysnptools
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(package-with-python2 python-pysnptools))
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(define-public python-socksipy-branch
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(package
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(name "python-socksipy-branch")
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@ -7328,6 +7438,27 @@ PEP 8.")
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(define-public python2-pyflakes
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(package-with-python2 python-pyflakes))
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;; Flake8 2.6 requires an older version of pyflakes.
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;; This should be removed ASAP.
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(define-public python-pyflakes-1.2
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(package (inherit python-pyflakes)
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(version "1.2.3")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "pyflakes" version))
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(sha256
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||||
(base32
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||||
"17hkw8yd44cr8fz13phy4aih3r5j2p7ild4zlvqdh2c8dmiinjif"))))
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(arguments
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'(#:phases
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(modify-phases %standard-phases
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;; This one test fails.
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(replace 'check
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(lambda _ (invoke "pytest" "-vv" "-k" "not test_f_string"))))))
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(native-inputs
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`(("python-pytest" ,python-pytest)))))
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(define-public python-mccabe
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(package
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(name "python-mccabe")
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@ -7386,25 +7517,6 @@ complexity of Python source code.")
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(define-public python2-pep8-1.5.7
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(package-with-python2 python-pep8-1.5.7))
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;; Flake8 2.4.1 requires an older version of pyflakes.
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;; This should be removed ASAP.
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(define-public python-pyflakes-0.8.1
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(package (inherit python-pyflakes)
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(version "0.8.1")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "pyflakes" version))
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||||
(sha256
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||||
(base32
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||||
"0sbpq6pqm1i9wqi41mlfrsc5rk92jv4mskvlyxmnhlbdnc80ma1z"))))
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||||
(arguments
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||||
;; XXX Tests not compatible with Python 3.5.
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'(#:tests? #f))))
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(define-public python2-pyflakes-0.8.1
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(package-with-python2 python-pyflakes-0.8.1))
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(define-public python-flake8
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(package
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(name "python-flake8")
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|
@ -7451,31 +7563,39 @@ complexity of Python source code.")
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("python2-typing" ,python2-typing)
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,@(package-propagated-inputs base))))))
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;; python-hacking requires flake8 <2.6.0.
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(define-public python-flake8-2.5
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;; python-hacking requires flake8 <2.7.0.
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(define-public python-flake8-2.6
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(package
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(inherit python-flake8)
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(version "2.5.5")
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(version "2.6.2")
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(source (origin
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(method url-fetch)
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||||
(uri (pypi-uri "flake8" version))
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||||
(sha256
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||||
(base32
|
||||
"1snylqwbmrylbx3r1wpz8ggk98f6bcag4441ag8mm2l7wyn58sij"))))
|
||||
"0y57hzal0j84dh9i1g1g6dc4aywvrnhy2fjmmbglpv5ajihxh713"))))
|
||||
(arguments
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`(#:phases
|
||||
(modify-phases %standard-phases
|
||||
(add-after 'unpack 'use-later-pycodestyles
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(lambda __
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(substitute* '("flake8.egg-info/requires.txt"
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"setup.py")
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(("pycodestyle >= 2.0, < 2.1")
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"pycodestyle >= 2.0"))
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#t))
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(delete 'check)
|
||||
(add-after 'install 'check
|
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(add-installed-pythonpath inputs outputs)
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(invoke "pytest" "-v")
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#t)))))
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(propagated-inputs
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`(("python-pep8" ,python-pep8)
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,@(package-propagated-inputs python-flake8)))
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(properties `((python2-variant . ,(delay python2-flake8-2.5))))))
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(define-public python2-flake8-2.5
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(package
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(inherit python2-flake8)
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(version (package-version python-flake8-2.5))
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(source (origin
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||||
(inherit (package-source python-flake8-2.5))))
|
||||
(propagated-inputs
|
||||
`(("python2-pep8" ,python2-pep8)
|
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,@(package-propagated-inputs python2-flake8)))))
|
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("python-pycodestyle" ,python-pycodestyle)
|
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("python-entrypoints" ,python-entrypoints)
|
||||
("python-pyflakes" ,python-pyflakes-1.2)
|
||||
("python-mccabe" ,python-mccabe)))))
|
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|
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(define-public python-flake8-polyfill
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||||
(package
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|
@ -19695,3 +19815,70 @@ workspace...")
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|||
dependencies. It implements the @uref{http://opensoundcontrol.org/spec-1_0,
|
||||
Open Sound Control 1.0} specification.")
|
||||
(license license:unlicense)))
|
||||
|
||||
(define-public python-voluptuous
|
||||
(package
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||||
(name "python-voluptuous")
|
||||
(version "0.11.7")
|
||||
(source
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||||
(origin
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||||
(method url-fetch)
|
||||
(uri (pypi-uri "voluptuous" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0mplkcpb5d8wjf8vk195fys4y6a3wbibiyf708imw33lphfk9g1a"))))
|
||||
(build-system python-build-system)
|
||||
(native-inputs
|
||||
`(("python-nose" ,python-nose)))
|
||||
(home-page "https://github.com/alecthomas/voluptuous")
|
||||
(synopsis "Python data validation library")
|
||||
(description
|
||||
"Voluptuous is a Python data validation library. It is primarily
|
||||
intended for validating data coming into Python as JSON, YAML, etc.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-cmd2
|
||||
(package
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||||
(name "python-cmd2")
|
||||
(version "1.0.2")
|
||||
(source
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||||
(origin
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||||
(method url-fetch)
|
||||
(uri (pypi-uri "cmd2" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1f18plbc9yyvhn0js3d2bii9yld8zfl775gxsaw9jza5pmlg9ss2"))))
|
||||
(build-system python-build-system)
|
||||
(propagated-inputs
|
||||
`(("python-attrs" ,python-attrs)
|
||||
("python-colorama" ,python-colorama)
|
||||
("python-pyperclip" ,python-pyperclip)
|
||||
("python-wcwidth" ,python-wcwidth)))
|
||||
(native-inputs
|
||||
`(("python-codecov" ,python-codecov)
|
||||
("python-coverage" ,python-coverage)
|
||||
("python-doc8" ,python-doc8)
|
||||
("python-flake8" ,python-flake8)
|
||||
("python-invoke" ,python-invoke)
|
||||
("python-mock" ,python-mock)
|
||||
("python-pytest" ,python-pytest)
|
||||
("python-pytest-cov" ,python-pytest-cov)
|
||||
("python-pytest-mock" ,python-pytest-mock)
|
||||
("python-setuptools-scm" ,python-setuptools-scm)
|
||||
("python-sphinx" ,python-sphinx)
|
||||
("python-sphinx-autobuild" ,python-sphinx-autobuild)
|
||||
("python-sphinx-rtd-theme" ,python-sphinx-rtd-theme)
|
||||
("python-tox" ,python-tox)
|
||||
("python-twine" ,python-twine)
|
||||
("which" ,which)))
|
||||
(home-page "https://github.com/python-cmd2/cmd2")
|
||||
(synopsis "Tool for building interactive command line applications")
|
||||
(description
|
||||
"Cmd2 is a tool for building interactive command line applications in
|
||||
Python. Its goal is to make it quick and easy for developers to build
|
||||
feature-rich and user-friendly interactive command line applications. It
|
||||
provides a simple API which is an extension of Python's built-in @code{cmd}
|
||||
module. @code{cmd2} provides a wealth of features on top of @code{cmd} to
|
||||
make your life easier and eliminates much of the boilerplate code which would
|
||||
be necessary when using @code{cmd}.")
|
||||
(license license:expat)))
|
||||
|
|
|
|||
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