mirror of
https://codeberg.org/guix/guix.git
synced 2025-10-02 02:15:12 +00:00
Merge branch 'master' into core-updates
Conflicts: gnu/local.mk gnu/packages/algebra.scm gnu/packages/bioinformatics.scm gnu/packages/curl.scm gnu/packages/docbook.scm gnu/packages/emacs-xyz.scm gnu/packages/maths.scm gnu/packages/plotutils.scm gnu/packages/python-web.scm gnu/packages/python-xyz.scm gnu/packages/radio.scm gnu/packages/readline.scm gnu/packages/tls.scm gnu/packages/xml.scm gnu/packages/xorg.scm
This commit is contained in:
Marius Bakke
commit
8d59c262ad
176 changed files with 16041 additions and 6439 deletions
|
|
@ -19,7 +19,7 @@
|
|||
;;; Copyright © 2015, 2016 Chris Marusich <cmmarusich@gmail.com>
|
||||
;;; Copyright © 2016 Danny Milosavljevic <dannym+a@scratchpost.org>
|
||||
;;; Copyright © 2016 Lukas Gradl <lgradl@openmailbox.org>
|
||||
;;; Copyright © 2016, 2018, 2019 Hartmut Goebel <h.goebel@crazy-compilers.com>
|
||||
;;; Copyright © 2016, 2018, 2019, 2021 Hartmut Goebel <h.goebel@crazy-compilers.com>
|
||||
;;; Copyright © 2016 Daniel Pimentel <d4n1@d4n1.org>
|
||||
;;; Copyright © 2016 Sou Bunnbu <iyzsong@gmail.com>
|
||||
;;; Copyright © 2016, 2017 Troy Sankey <sankeytms@gmail.com>
|
||||
|
|
@ -67,7 +67,7 @@
|
|||
;;; Copyright © 2019, 2020 Giacomo Leidi <goodoldpaul@autistici.org>
|
||||
;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz>
|
||||
;;; Copyright © 2019, 2020 Tanguy Le Carrour <tanguy@bioneland.org>
|
||||
;;; Copyright © 2019 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
|
||||
;;; Copyright © 2019, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
|
||||
;;; Copyright © 2020 Riku Viitanen <riku.viitanen@protonmail.com>
|
||||
;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
|
||||
;;; Copyright © 2020 sirgazil <sirgazil@zoho.com>
|
||||
|
|
@ -219,6 +219,49 @@
|
|||
#:use-module (srfi srfi-1)
|
||||
#:use-module (srfi srfi-26))
|
||||
|
||||
(define-public python-argopt
|
||||
(package
|
||||
(name "python-argopt")
|
||||
(version "0.7.0")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "argopt" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0ybs7kkp0cpl8zn1lvf7481xhssg1bbhh5la2cjzdm5yibashyxa"))))
|
||||
(build-system python-build-system)
|
||||
(native-inputs
|
||||
`(("python-coverage" ,python-coverage)
|
||||
("python-nose" ,python-nose)
|
||||
("python-setuptools" ,python-setuptools) ; Won't build without this.
|
||||
("python-setuptools-scm" ,python-setuptools-scm)))
|
||||
(propagated-inputs
|
||||
`(("python-toml" ,python-toml)
|
||||
("python-flake8" ,python-flake8)))
|
||||
(home-page "https://github.com/casperdcl/argopt")
|
||||
(synopsis "Generate a command-line interface from a docstring")
|
||||
(description "This package provides tools to define a command line interface
|
||||
from a docstring rather than the other way around.")
|
||||
(license license:mpl2.0)))
|
||||
|
||||
(define-public python-cachetools
|
||||
(package
|
||||
(name "python-cachetools")
|
||||
(version "4.2.2")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "cachetools" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1zqc098gk6y614lxwqd9z2gm8lldgvrpid133pnlm4m048gfvdb1"))))
|
||||
(build-system python-build-system)
|
||||
(home-page "https://github.com/tkem/cachetools/")
|
||||
(synopsis "Extensible memoizing collections and decorators")
|
||||
(description "This module provides various memoizing collections and
|
||||
decorators, including variants of the Python standard library's
|
||||
@code{lru_cache} function decorator.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-colorful
|
||||
(package
|
||||
(name "python-colorful")
|
||||
|
|
@ -851,9 +894,6 @@ module and then similar looking characters are removed.")
|
|||
and function call return values in a human-readable way.")
|
||||
(license license:asl2.0)))
|
||||
|
||||
(define-public python2-shapely
|
||||
(package-with-python2 python-shapely))
|
||||
|
||||
(define-public python-clyent
|
||||
(package
|
||||
(name "python-clyent")
|
||||
|
|
@ -2129,6 +2169,25 @@ The event dispatch is implicit, which means you can easily use @code{Eventlet}
|
|||
from the Python interpreter, or as a small part of a larger application.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-sinfo
|
||||
(package
|
||||
(name "python-sinfo")
|
||||
(version "0.3.4")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "sinfo" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0kdsp883mx0lfyykv0p12bvs203kdm3skb8bw5wf2pc7kb393sl1"))))
|
||||
(build-system python-build-system)
|
||||
(propagated-inputs
|
||||
`(("python-stdlib-list" ,python-stdlib-list)))
|
||||
(home-page "https://gitlab.com/joelostblom/session_info")
|
||||
(synopsis "Output module version information loaded in a Python session")
|
||||
(description "This package outputs version information for modules loaded
|
||||
in the current session, Python, and the OS.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-six
|
||||
(package
|
||||
(name "python-six")
|
||||
|
|
@ -4427,7 +4486,7 @@ which can produce feeds in RSS 2.0, RSS 0.91, and Atom formats.")
|
|||
(define-public python-pydantic
|
||||
(package
|
||||
(name "python-pydantic")
|
||||
(version "1.6.1")
|
||||
(version "1.8.2")
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
|
|
@ -4436,24 +4495,39 @@ which can produce feeds in RSS 2.0, RSS 0.91, and Atom formats.")
|
|||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "1380s9k77g6q15by9fkxndczjk89q6xpz09jdrqip535xws2z3j8"))))
|
||||
(base32 "06162dss6mvi7wiy2lzxwvzajwxgy8b2fyym7qipaj7zibcqalq2"))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
'(#:phases
|
||||
(modify-phases %standard-phases
|
||||
;; Reported upstream:
|
||||
;; <https://github.com/samuelcolvin/pydantic/issues/1580>.
|
||||
;; Disable the faulty test as the fix is unclear.
|
||||
(add-before 'check 'disable-test
|
||||
(lambda _
|
||||
;; Reported upstream:
|
||||
;; <https://github.com/samuelcolvin/pydantic/issues/1580>.
|
||||
;; Disable the faulty test as the fix is unclear.
|
||||
(substitute* "tests/test_validators.py"
|
||||
(("test_assert_raises_validation_error")
|
||||
"_test_assert_raises_validation_error"))
|
||||
#t))
|
||||
|
||||
;; These fail because of <https://bugs.python.org/issue40398>.
|
||||
;; Remove after Python has been upgraded to >= 3.9.
|
||||
(substitute* "tests/test_generics.py"
|
||||
(("assert replace_types\\(Callable, \\{T: int\\}\\) == Callable")
|
||||
""))
|
||||
(substitute* "tests/test_schema.py"
|
||||
(("test_unenforced_constraints_schema")
|
||||
"_test_unenforced_constraints_schema"))
|
||||
|
||||
;; Disable tests for the Hypothesis plugin because it is tricky
|
||||
;; to configure in the build container.
|
||||
(delete-file "tests/test_hypothesis_plugin.py")))
|
||||
(replace 'check
|
||||
(lambda _ (invoke "pytest" "-vv" "tests"))))))
|
||||
(lambda _ (invoke "pytest" "-vv"))))))
|
||||
(native-inputs
|
||||
`(("python-pytest" ,python-pytest)))
|
||||
`(("python-pytest" ,python-pytest)
|
||||
("python-pytest-mock" ,python-pytest-mock)))
|
||||
(propagated-inputs
|
||||
`(("python-typing-extensions" ,python-typing-extensions)))
|
||||
(home-page "https://github.com/samuelcolvin/pydantic")
|
||||
(synopsis "Python data validation and settings management")
|
||||
(description
|
||||
|
|
@ -4936,8 +5010,8 @@ capabilities.")
|
|||
(define-public python2-numpy
|
||||
(let ((numpy (package-with-python2
|
||||
(strip-python2-variant python-numpy))))
|
||||
(package/inherit
|
||||
numpy
|
||||
(package
|
||||
(inherit numpy)
|
||||
(version "1.16.5")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
|
|
@ -5039,6 +5113,51 @@ objects.")
|
|||
(define-public python2-colormath
|
||||
(package-with-python2 python-colormath))
|
||||
|
||||
(define-public python-sparse
|
||||
(package
|
||||
(name "python-sparse")
|
||||
(version "0.12.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "sparse" version))
|
||||
(sha256
|
||||
(base32
|
||||
"05lmzckv69cvxavhdr36k803bgr5dl04cppglid1l880xswc759c"))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
`(#:phases
|
||||
(modify-phases %standard-phases
|
||||
(replace 'check
|
||||
(lambda* (#:key tests? #:allow-other-keys)
|
||||
(when tests?
|
||||
(invoke "python" "-m" "pytest" "-v")))))))
|
||||
(propagated-inputs
|
||||
`(("python-numba" ,python-numba)
|
||||
("python-numpy" ,python-numpy)
|
||||
("python-scipy" ,python-scipy)))
|
||||
(native-inputs
|
||||
`(("python-dask" ,python-dask)
|
||||
("python-pytest" ,python-pytest)
|
||||
("python-pytest-black" ,python-pytest-black)
|
||||
("python-pytest-cov" ,python-pytest-cov)))
|
||||
(home-page "https://github.com/pydata/sparse/")
|
||||
(synopsis "Library for multi-dimensional sparse arrays")
|
||||
(description
|
||||
"This package implements sparse arrays of arbitrary dimension on top of
|
||||
@code{numpy} and @code{scipy.sparse}. Sparse array is a matrix in which most
|
||||
of the elements are zero. @code{python-sparse} generalizes the
|
||||
@code{scipy.sparse.coo_matrix} and @code{scipy.sparse.dok_matrix} layouts, but
|
||||
extends beyond just rows and columns to an arbitrary number of dimensions.
|
||||
Additionally, this project maintains compatibility with the
|
||||
@code{numpy.ndarray} interface rather than the @code{numpy.matrix} interface
|
||||
used in @code{scipy.sparse}. These differences make this project useful in
|
||||
certain situations where @code{scipy.sparse} matrices are not well suited, but
|
||||
it should not be considered a full replacement. It lacks layouts that are not
|
||||
easily generalized like @dfn{compressed sparse row/column}(CSR/CSC) and
|
||||
depends on @code{scipy.sparse} for some computations.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-spectra
|
||||
(package
|
||||
(name "python-spectra")
|
||||
|
|
@ -5529,8 +5648,11 @@ convert between colorspaces like sRGB, XYZ, CIEL*a*b*, CIECAM02, CAM02-UCS, etc.
|
|||
#t))
|
||||
(add-before 'install 'install-jquery-ui
|
||||
(lambda* (#:key outputs inputs #:allow-other-keys)
|
||||
(let ((dir (string-append (assoc-ref outputs "out")
|
||||
"/lib/python3.7/site-packages/matplotlib/backends/web_backend/")))
|
||||
(let* ((python-version (python-version
|
||||
(assoc-ref inputs "python")))
|
||||
(dir (string-append (assoc-ref outputs "out")
|
||||
"/lib/python" python-version "/site-packages"
|
||||
"/matplotlib/backends/web_backend/")))
|
||||
(mkdir-p dir)
|
||||
(invoke "unzip"
|
||||
(assoc-ref inputs "jquery-ui")
|
||||
|
|
@ -7506,9 +7628,6 @@ profile, launches a cluster and returns a view. On program exit it shuts the
|
|||
cluster down and deletes the throwaway profile.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python2-ipython-cluster-helper
|
||||
(package-with-python2 python-ipython-cluster-helper))
|
||||
|
||||
(define-public python-traitlets
|
||||
(package
|
||||
(name "python-traitlets")
|
||||
|
|
@ -8042,7 +8161,8 @@ features useful for text console applications.")
|
|||
(define-public python2-urwid
|
||||
(let ((base (package-with-python2
|
||||
(strip-python2-variant python-urwid))))
|
||||
(package/inherit base
|
||||
(package
|
||||
(inherit base)
|
||||
(version "2.1.0")
|
||||
(source
|
||||
(origin
|
||||
|
|
@ -9477,8 +9597,8 @@ markdown_py is also provided to convert Markdown files to HTML.")
|
|||
;; Markdown 3.2 dropped support for Python 2.
|
||||
(define-public python2-markdown
|
||||
(let ((base (package-with-python2 (strip-python2-variant python-markdown))))
|
||||
(package/inherit
|
||||
base
|
||||
(package
|
||||
(inherit base)
|
||||
(version "3.1.1")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
|
|
@ -9596,6 +9716,26 @@ output.")
|
|||
"Python library that makes exceptions handling and inspection easier.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-stdlib-list
|
||||
(package
|
||||
(name "python-stdlib-list")
|
||||
(version "0.8.0")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "stdlib-list" version))
|
||||
(sha256
|
||||
(base32
|
||||
"17vdn4q0sdlndc2fr9svapxx6366hnrhkn0fswp1xmr0jxqh7rd1"))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
`(#:tests? #f)) ; Tests require more dependencies.
|
||||
(native-inputs
|
||||
`(("python-sphinx" ,python-sphinx)))
|
||||
(home-page "https://github.com/jackmaney/python-stdlib-list")
|
||||
(synopsis "Python Standard Libraries")
|
||||
(description "This package contains a list of Python Standard Libraries.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-straight-plugin
|
||||
(package
|
||||
(name "python-straight-plugin")
|
||||
|
|
@ -9646,8 +9786,8 @@ from an XML-based format.")
|
|||
;; Fonttools 4.x dropped support for Python 2, so stick with 3.x here.
|
||||
(define-public python2-fonttools
|
||||
(let ((base (package-with-python2 (strip-python2-variant python-fonttools))))
|
||||
(package/inherit
|
||||
base
|
||||
(package
|
||||
(inherit base)
|
||||
(version "3.44.0")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
|
|
@ -10269,6 +10409,30 @@ implementations of ASN.1-based codecs and protocols.")
|
|||
module to older versions of Python.")
|
||||
(license license:psfl)))
|
||||
|
||||
(define-public python-asn1tools
|
||||
(package
|
||||
(name "python-asn1tools")
|
||||
(version "0.158.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "asn1tools" version))
|
||||
(sha256
|
||||
(base32 "1k88a1azmyvp2ab6qcf2i40dig5abhyn7cmlyhmwwh8kr3syvma0"))))
|
||||
(build-system python-build-system)
|
||||
(propagated-inputs
|
||||
`(("python-bitstruct" ,python-bitstruct)
|
||||
("python-diskcache" ,python-diskcache)
|
||||
("python-prompt-toolkit" ,python-prompt-toolkit)
|
||||
("python-pyparsing" ,python-pyparsing)))
|
||||
(home-page "https://github.com/eerimoq/asn1tools")
|
||||
(synopsis "ASN.1 parsing, encoding and decoding")
|
||||
(description "This package provides ASN.1 parsing, encoding and decoding
|
||||
for Python, including constraints checking. It supports several
|
||||
codecs (e.g. BER, PER, UPER, XER) as well as limited C source code generating
|
||||
for OER and UPER.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python2-ipaddr
|
||||
(package
|
||||
(name "python2-ipaddr")
|
||||
|
|
@ -10686,14 +10850,13 @@ JSON Reference and JSON Pointer.")
|
|||
(define-public python-fastjsonschema
|
||||
(package
|
||||
(name "python-fastjsonschema")
|
||||
(version "2.15.0")
|
||||
(version "2.15.1")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "fastjsonschema" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0xknp399gpdjf08lrq2yvv66s7nsc51fgbm6vph7vyyg1ckbmv71"))))
|
||||
(base32 "1ln2j60jzyn6p8i8ljygfgrji58hc23452g7nllkcjdk4p93c7v7"))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
`(#:tests? #f ; Fail with a strange backtrace ending in importlib.
|
||||
|
|
@ -11140,29 +11303,8 @@ convert an @code{.ipynb} notebook file into various static formats including:
|
|||
(description
|
||||
"The Jupyter HTML notebook is a web-based notebook environment for
|
||||
interactive computing.")
|
||||
(properties `((python2-variant . ,(delay python2-notebook))))
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python2-notebook
|
||||
(let ((base (package-with-python2
|
||||
(strip-python2-variant python-notebook))))
|
||||
(package/inherit base
|
||||
(native-inputs
|
||||
`(("python2-mock" ,python2-mock)
|
||||
,@(package-native-inputs base)))
|
||||
(arguments
|
||||
(substitute-keyword-arguments (package-arguments base)
|
||||
((#:phases phases)
|
||||
`(modify-phases ,phases
|
||||
(add-before 'check 'disable-test-case
|
||||
;; The test requires network access to localhost. Curiously it
|
||||
;; fails with Python 2 only. Simply make the test-case return
|
||||
;; immediately.
|
||||
(lambda _
|
||||
(substitute*
|
||||
"notebook/services/nbconvert/tests/test_nbconvert_api.py"
|
||||
(("formats = self.nbconvert_api") "return #")))))))))))
|
||||
|
||||
(define-public python-widgetsnbextension
|
||||
(package
|
||||
(name "python-widgetsnbextension")
|
||||
|
|
@ -12768,14 +12910,13 @@ designed to work across multiple versions of Python.")
|
|||
(define-public python-cookiecutter
|
||||
(package
|
||||
(name "python-cookiecutter")
|
||||
(version "1.7.2")
|
||||
(version "1.7.3")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "cookiecutter" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1b2xa5dypk1vf8aq599fd8zw4y0pwvq3hgl7ia8aiv8gg3ab5dpg"))))
|
||||
(base32 "0mx49whhwcxmvcak27zr7p7ndzkn3w7psfd7fzh3n91fi1r4v6kb"))))
|
||||
(build-system python-build-system)
|
||||
(native-inputs
|
||||
`(("python-freezegun" ,python-freezegun)
|
||||
|
|
@ -15421,6 +15562,11 @@ extracting firmware images")
|
|||
'(;; The tests require some extra resources to be downloaded.
|
||||
;; TODO Try packaging these resources.
|
||||
#:tests? #f))
|
||||
(propagated-inputs
|
||||
`(("python-click" ,python-click)
|
||||
("python-joblib" ,python-joblib)
|
||||
("python-regex" ,python-regex)
|
||||
("python-tqdm" ,python-tqdm)))
|
||||
(native-inputs
|
||||
`(("unzip" ,unzip)))
|
||||
(home-page "http://nltk.org/")
|
||||
|
|
@ -15442,7 +15588,8 @@ reasoning, wrappers for natural language processing libraries.")
|
|||
(method url-fetch)
|
||||
(uri (pypi-uri "nltk" version ".zip"))
|
||||
(sha256
|
||||
(base32 "153x2clrnigs74jdgnn3qmljdjj4gprmvpdvh49i18ls4m8mbm5y"))))))
|
||||
(base32 "153x2clrnigs74jdgnn3qmljdjj4gprmvpdvh49i18ls4m8mbm5y"))))
|
||||
(propagated-inputs `(("python-six" ,python-six)))))
|
||||
|
||||
(define-public python2-nltk
|
||||
(package-with-python2 python-nltk))
|
||||
|
|
@ -16410,6 +16557,30 @@ converting text with ANSI color codes to HTML or LaTeX.")
|
|||
(define-public python2-ansi2html
|
||||
(package-with-python2 python-ansi2html))
|
||||
|
||||
(define-public python-easy-ansi
|
||||
(package
|
||||
(name "python-easy-ansi")
|
||||
(version "0.3")
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://gitlab.com/joeysbytes/easy-ansi")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "0albh55ynzs98qy9pln4qaxw5qhhh3lk09jy9bx19gycrp1c3lc3"))))
|
||||
(build-system python-build-system)
|
||||
(home-page "https://gitlab.com/joeysbytes/easy-ansi")
|
||||
(synopsis "Terminal framework API")
|
||||
(description
|
||||
"Easy ANSI is a terminal framework API to give you an easy way to use
|
||||
colors, cursor control movements, and line/box drawing. It is not meant as a
|
||||
replacement to more full-featured frameworks (such as curses or urwid), but as
|
||||
a tool to quickly create nice-looking screens in your terminal window. You
|
||||
can even create animations with the cursor controls.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-ddt
|
||||
(package
|
||||
(name "python-ddt")
|
||||
|
|
@ -20867,28 +21038,41 @@ N-dimensional arrays for Python.")
|
|||
(define-public python-anndata
|
||||
(package
|
||||
(name "python-anndata")
|
||||
(version "0.7.1")
|
||||
(version "0.7.6")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "anndata" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0rnfbpr55j1a1bi2kd4mz444741hrn74kz90h5rnjr59jmpfnh09"))))
|
||||
"1ch8yp0xmag6z0kl01pljm35lbbwax7lrimfhiclpkd4m6xngk53"))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
`(#:phases
|
||||
`(#:tests? #f ; The tarball from PyPi doesn't include tests.
|
||||
#:phases
|
||||
(modify-phases %standard-phases
|
||||
(add-after 'unpack 'delete-inconvenient-tests
|
||||
(lambda _
|
||||
;; This test depends on python-scikit-learn.
|
||||
(delete-file "anndata/tests/test_inplace_subset.py")
|
||||
#t))
|
||||
(delete 'check)
|
||||
(add-after 'install 'check
|
||||
(add-before 'build 'relax-dependency-requirements
|
||||
(lambda _
|
||||
;; We need to upgrade python-pandas to avoid
|
||||
;; https://github.com/pandas-dev/pandas/issues/35446
|
||||
(substitute* "pyproject.toml"
|
||||
(("pandas>=1.1.1") "pandas>=1.0.5"))))
|
||||
(replace 'build
|
||||
(lambda _
|
||||
;; ZIP does not support timestamps before 1980.
|
||||
(setenv "SOURCE_DATE_EPOCH" "315532800")
|
||||
(invoke "flit" "build")))
|
||||
(replace 'install
|
||||
(lambda* (#:key inputs outputs #:allow-other-keys)
|
||||
(add-installed-pythonpath inputs outputs)
|
||||
(invoke "pytest" "-vv"))))))
|
||||
(let ((out (assoc-ref outputs "out")))
|
||||
(for-each (lambda (wheel)
|
||||
(format #true wheel)
|
||||
(invoke "python" "-m" "pip" "install"
|
||||
wheel (string-append "--prefix=" out)))
|
||||
(find-files "dist" "\\.whl$")))
|
||||
#t)))))
|
||||
(propagated-inputs
|
||||
`(("python-h5py" ,python-h5py)
|
||||
("python-importlib-metadata" ,python-importlib-metadata)
|
||||
|
|
@ -20901,6 +21085,8 @@ N-dimensional arrays for Python.")
|
|||
(native-inputs
|
||||
`(("python-joblib" ,python-joblib)
|
||||
("python-pytest" ,python-pytest)
|
||||
("python-toml" ,python-toml)
|
||||
("python-flit" ,python-flit)
|
||||
("python-setuptools-scm" ,python-setuptools-scm)))
|
||||
(home-page "https://github.com/theislab/anndata")
|
||||
(synopsis "Annotated data for data analysis pipelines")
|
||||
|
|
@ -24812,6 +24998,41 @@ module patches @code{asyncio} to allow nested use of @code{asyncio.run} and
|
|||
@code{loop.run_until_complete}.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-simpervisor
|
||||
(package
|
||||
(name "python-simpervisor")
|
||||
(version "0.4")
|
||||
(source
|
||||
(origin
|
||||
;; Tests not included in release.
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/yuvipanda/simpervisor")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "1brsisx7saf4ic0dih1n5y7rbdbwn1ywv9pl32bch3061r46prvv"))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
`(#:tests? #f ; Test suite can't find aiohttp.
|
||||
#:phases
|
||||
(modify-phases %standard-phases
|
||||
(replace 'check
|
||||
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
|
||||
(when tests?
|
||||
(add-installed-pythonpath inputs outputs)
|
||||
(invoke "pytest" "--maxfail" "3" "--verbose"))
|
||||
#t)))))
|
||||
(native-inputs
|
||||
`(("python-aiohttp" ,python-aiohttp)
|
||||
("python-pytest" ,python-pytest)
|
||||
("python-pytest-asyncio" ,python-pytest-asyncio)))
|
||||
(home-page "https://github.com/yuvipanda/simpervisor")
|
||||
(synopsis "Simple async process supervisor")
|
||||
(description
|
||||
"This package provides a simple async process supervisor in Python.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-parallel
|
||||
(package
|
||||
(name "python-parallel")
|
||||
|
|
@ -25071,6 +25292,50 @@ query Watchman to discover file changes.")
|
|||
environment.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-logutils
|
||||
(package
|
||||
(name "python-logutils")
|
||||
(version "0.3.5")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "logutils" version))
|
||||
(sha256
|
||||
(base32
|
||||
"10lsi5wv5ysnvf9ya4ncbix6mmipnv5067sf2cglc2f2sljql1dw"))))
|
||||
(build-system python-build-system)
|
||||
(home-page "https://bitbucket.org/vinay.sajip/logutils/")
|
||||
(synopsis "Logging utilities")
|
||||
(description "This package provides a set of handlers for the Python
|
||||
standard library logging package. Some of these handlers are out-of-scope
|
||||
for the standard library, and so they are packaged here. Others are updated
|
||||
versions which have appeared in recent Python releases, but are usable with
|
||||
older versions of Python and so are packaged here.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-helper
|
||||
(package
|
||||
(name "python-helper")
|
||||
(version "2.5.0")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "helper" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1d2j64wgbggzv5rhvil10zndp2w78wa5np5w0psj122ws9qr9wsa"))))
|
||||
(build-system python-build-system)
|
||||
(native-inputs
|
||||
`(("python-mock" ,python-mock)))
|
||||
(propagated-inputs
|
||||
`(("python-logutils" ,python-logutils)
|
||||
("python-pyyaml" ,python-pyyaml)))
|
||||
(home-page "https://github.com/gmr/helper")
|
||||
(synopsis "Library for writing configurable applications and daemons")
|
||||
(description
|
||||
"This package provides procedures for quickly writing configurable
|
||||
applications and daemons.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-qtsass
|
||||
(package
|
||||
(name "python-qtsass")
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue