gnu: sage: Safeguard _sage_getargspec_cython.

* gnu/packages/sagemath.scm (sage)[source]: Add patch.
* gnu/packages/patches/sage-safeguard-sage-getargspec-cython.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Register it.

Change-Id: I7dd491d29131ee1e192e7406cc46469cbd0d303f
This commit is contained in:
Vinicius Monego 2025-07-05 22:07:08 -03:00 committed by Andreas Enge
parent 29f7068a61
commit 917e71394a
No known key found for this signature in database
GPG key ID: F7D5C9BF765C61E3
3 changed files with 86 additions and 1 deletions

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@ -2264,6 +2264,7 @@ dist_patch_DATA = \
%D%/packages/patches/rw-igraph-0.10.patch \
%D%/packages/patches/rxvt-unicode-fix-cursor-position.patch \
%D%/packages/patches/s7-flint-3.patch \
%D%/packages/patches/sage-safeguard-sage-getargspec-cython.patch \
%D%/packages/patches/sajson-for-gemmi-numbers-as-strings.patch \
%D%/packages/patches/sajson-build-with-gcc10.patch \
%D%/packages/patches/sbc-fix-build-non-x86.patch \

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@ -0,0 +1,79 @@
From d87a60c54453763476845138133ad7da54c159a7 Mon Sep 17 00:00:00 2001
From: user202729 <25191436+user202729@users.noreply.github.com>
Date: Mon, 24 Mar 2025 10:38:12 +0700
Subject: [PATCH 1/2] Safeguard _sage_getargspec_cython
---
This patch was taken from: https://github.com/sagemath/sage/pull/39776
It will be released in version 10.7 and can be removed after the upgrade.
src/sage/misc/sageinspect.py | 5 +++++
1 file changed, 5 insertions(+)
diff --git a/src/sage/misc/sageinspect.py b/src/sage/misc/sageinspect.py
index 6fc0e29551f..d25f1f81820 100644
--- a/src/sage/misc/sageinspect.py
+++ b/src/sage/misc/sageinspect.py
@@ -1139,6 +1139,11 @@ def _sage_getargspec_cython(source):
defaults=('a string', {(1, 2, 3): True}),
kwonlyargs=[], kwonlydefaults=None, annotations={})
"""
+ if not isinstance(source, str):
+ # the caller ought to ensure this, but if it forgets (e.g. passing None),
+ # we raise the correct exception type to avoid confusing error message
+ # and possible further hard-to-debug errors, see :issue:`39735`
+ raise TypeError
defpos = source.find('def ')
assert defpos > -1, "The given source does not contain 'def'"
s = source[defpos:].strip()
From 21dd8224fca8a70490c754309350d08f56178809 Mon Sep 17 00:00:00 2001
From: user202729 <25191436+user202729@users.noreply.github.com>
Date: Thu, 27 Mar 2025 22:58:22 +0700
Subject: [PATCH 2/2] Change to AssertionError and handle issue upstream
---
src/sage/misc/sageinspect.py | 22 ++++++++++++----------
1 file changed, 12 insertions(+), 10 deletions(-)
diff --git a/src/sage/misc/sageinspect.py b/src/sage/misc/sageinspect.py
index b617e288b97..bb704d74075 100644
--- a/src/sage/misc/sageinspect.py
+++ b/src/sage/misc/sageinspect.py
@@ -1140,11 +1140,10 @@ def _sage_getargspec_cython(source):
defaults=('a string', {(1, 2, 3): True}),
kwonlyargs=[], kwonlydefaults=None, annotations={})
"""
- if not isinstance(source, str):
- # the caller ought to ensure this, but if it forgets (e.g. passing None),
- # we raise the correct exception type to avoid confusing error message
- # and possible further hard-to-debug errors, see :issue:`39735`
- raise TypeError
+ assert isinstance(source, str)
+ # the caller ought to ensure this, but if it forgets (e.g. passing None),
+ # we avoid raising AttributeError to avoid confusing error message
+ # and possible further hard-to-debug errors, see :issue:`39735`
defpos = source.find('def ')
assert defpos > -1, "The given source does not contain 'def'"
s = source[defpos:].strip()
@@ -1682,12 +1681,15 @@ def foo(x, a='\')"', b={not (2+1==3):'bar'}): return
except TypeError: # arg is not a code object
# The above "hopefully" was wishful thinking:
try:
- return inspect.FullArgSpec(*_sage_getargspec_cython(sage_getsource(obj)))
+ source = sage_getsource(obj)
except TypeError: # This happens for Python builtins
- # The best we can do is to return a generic argspec
- args = []
- varargs = 'args'
- varkw = 'kwds'
+ source = None
+ if source is not None:
+ return inspect.FullArgSpec(*_sage_getargspec_cython(source))
+ # The best we can do is to return a generic argspec
+ args = []
+ varargs = 'args'
+ varkw = 'kwds'
try:
defaults = func_obj.__defaults__
except AttributeError:

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@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2019, 2025 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2024 Vinicius Monego <monego@posteo.net>
;;; Copyright © 2024, 2025 Vinicius Monego <monego@posteo.net>
;;; Copyright © 2025 Ricardo Wurmus <rekado@elephly.net>
;;;
;;; This file is part of GNU Guix.
@ -368,6 +368,11 @@ database.")
(url "https://github.com/sagemath/sage")
(commit version)))
(file-name (git-file-name name version))
(patches
;; This patch works around a Cython issue and can be removed
;; after sage 10.7 is released. See
;; https://github.com/sagemath/sage/issues/39735
(search-patches "sage-safeguard-sage-getargspec-cython.patch"))
(sha256
(base32
"0m2f6k6nwgyzfhf45r0kp798aimjxhpfnmsp1k03jpj9d6mhadk4"))))