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gnu: python-h5py: Update to 3.13.0.

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* gnu/packages/python-xyz.scm (python-h5py): Update to 3.13.0.
[build-system]: Switch to pyproject-build-system.
[arguments]: Use gexps. Move a modified 'check phase after the 'install phase.
[native-inputs]: Add python-pytest-mpi, python-setuptools and python-wheel.

Signed-off-by: Andreas Enge <andreas@enge.fr>
This commit is contained in:
David Elsing 2025-05-01 09:35:13 +00:00 • committed by Andreas Enge
parent 40066ba37a
commit 93f4a0db06
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1 changed files with 27 additions and 10 deletions
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gnu/packages/python-xyz.scm
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@ -3872,24 +3872,41 @@ library.")
(define-public python-h5py (define-public python-h5py
(package (package
(name "python-h5py") (name "python-h5py")
(version "3.8.0") (version "3.13.0")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
(uri (pypi-uri "h5py" version)) (uri (pypi-uri "h5py" version))
(sha256 (sha256
(base32 "0pyr6z4h2xqbp49yx2i1401gl6yqh03h771zslwcy0201hpxiskg")))) (base32 "1hq5f5mnkv2138xsq7k7qncf6b7zc0cmm2fhhpd2603j31jy8w0q"))))
(build-system python-build-system) (build-system pyproject-build-system)
(arguments (arguments
'(#:phases (modify-phases %standard-phases (list
(add-after 'unpack 'fix-hdf5-paths #:phases
(lambda* (#:key inputs #:allow-other-keys) #~(modify-phases %standard-phases
(setenv "HDF5_DIR" (add-after 'unpack 'fix-hdf5-paths
(assoc-ref inputs "hdf5"))))))) (lambda _
(setenv "HDF5_DIR" #$(this-package-input "hdf5"))))
;; The tests only work after being installed.
(delete 'check)
(add-after 'install 'check
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
(when tests?
(setenv "H5PY_TEST_CHECK_FILTERS" "1")
(with-directory-excursion (site-packages inputs outputs)
(invoke "pytest" "-vv"))))))))
(propagated-inputs (list python-six python-numpy)) (propagated-inputs (list python-six python-numpy))
(inputs (list hdf5)) (inputs (list hdf5))
(native-inputs (list pkg-config python-cython python-ipython (native-inputs
python-pkgconfig python-pytest)) (list pkg-config
python-cython
python-ipython
python-pkgconfig
python-pytest
;; Required to run tests, but the MPI tests are skipped anyway.
python-pytest-mpi
python-setuptools
python-wheel))
(home-page "https://www.h5py.org/") (home-page "https://www.h5py.org/")
(synopsis "Read and write HDF5 files from Python") (synopsis "Read and write HDF5 files from Python")
(description (description