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gnu: packages/astronomy: Sort variables.
* gnu/packages/astronomy.scm: (python-asdf-standard, python-poppy, python-pysiaf, python-pyvo, python-rad, python-regions): Sort variables alphabetically. Change-Id: I614e6559d9bfa13f468e95ce0cf98d8507521027
This commit is contained in:
Sharlatan Hellseher
parent
ffafaef8d5
commit
94e8fe6a16
1 changed files with 252 additions and 252 deletions
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@ -2126,6 +2126,41 @@ support for reading and writing various compression algorithms including:
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@url{http://facebook.github.io/zstd/,Zstandard}.")
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(license license:bsd-3))))
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(define-public python-asdf-standard
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(package
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(name "python-asdf-standard")
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(version "1.3.0")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "asdf_standard" version))
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(sha256
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(base32
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"0r7dxbiwngpwwjdbs2vqk94v1vjsgyilswkq180d5slx74grcn2r"))))
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(build-system pyproject-build-system)
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(native-inputs
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(list python-asdf-bootstrap
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python-asdf-transform-schemas-bootstrap
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python-astropy-minimal
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python-jsonschema
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python-pypa-build
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python-pytest
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python-packaging
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python-setuptools-next
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python-setuptools-scm
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python-wheel))
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(home-page "https://asdf-standard.readthedocs.io/")
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(synopsis "ASDF standard schemas")
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(description
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"This package provides Python implementation of @acronym{ASDF, Advanced
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Scientific Data Format} - a proposed next generation interchange format for
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scientific data. ASDF aims to exist in the same middle ground that made FITS
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so successful, by being a hybrid text and binary format: containing human
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editable metadata for interchange, and raw binary data that is fast to load
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and use. Unlike FITS, the metadata is highly structured and is designed
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up-front for extensibility.")
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(license license:bsd-3)))
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(define-public python-asdf-transform-schemas
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(hidden-package
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(package
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@ -5780,6 +5815,54 @@ binned galaxy positions or shear) in cylindrical projection, but its core
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functionality is more general.")
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(license license:bsd-3)))
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(define-public python-poppy
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(package
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(name "python-poppy")
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(version "1.1.2")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "poppy" version))
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(sha256
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(base32 "0mvnd9rlglb1cqhaavd2lyxnvi4xmc133x50rzzlh00xn0gyxgfq"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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#:test-flags
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#~(list "--numprocesses" (number->string (parallel-job-count)))))
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(native-inputs
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(list python-docutils
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python-pytest
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python-pytest-astropy
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python-pytest-xdist
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python-setuptools-scm
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python-wheel))
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(propagated-inputs
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;; XXX: With python-synphot (marked as optional) package added to the list
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;; it tries to download from remote host during tests and fails. Overall
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;; tests take up to 5-8min to pass.
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(list python-astropy
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python-matplotlib
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python-numexpr
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python-numpy
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python-scipy))
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(home-page "https://poppy-optics.readthedocs.io/")
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(synopsis "Physical Optics Propagation in Python")
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(description
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"@acronym{POPPY, Physical Optics Propagation in Python} is a Python package that
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simulates physical optical propagation including diffraction. It implements a
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flexible framework for modeling Fraunhofer and Fresnel diffraction and point
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spread function formation, particularly in the context of astronomical
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telescopes.
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POPPY was developed as part of a simulation package for the James Webb Space
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Telescope, but is more broadly applicable to many kinds of imaging simulations.
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It is not, however, a substitute for high fidelity optical design software such
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as Zemax or Code V, but rather is intended as a lightweight alternative for
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cases for which diffractive rather than geometric optics is the topic of
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interest, and which require portability between platforms or ease of scripting.")
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(license license:bsd-3)))
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(define-public python-pvextractor
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(package
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(name "python-pvextractor")
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@ -6124,6 +6207,48 @@ data. Pysat's plug-in design allows analysis support for any data, including
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user provided data sets.")
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(license license:bsd-3)))
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(define-public python-pysiaf
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(package
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(name "python-pysiaf")
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(version "0.24.1")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "pysiaf" version))
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(sha256
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(base32 "0jgs50jmisv7b7am677q2c3kqjk0fch8gpvijzhdllhkav9wdhs0"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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#:test-flags
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#~(list "--numprocesses" (number->string (parallel-job-count))
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;; Disable 2 failing tests, see
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;; <https://github.com/spacetelescope/pysiaf/issues/338>
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"-k" (string-append "not test_write_jwst_siaf_xlsx"
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" and not test_write_jwst_siaf_xml" ))))
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(native-inputs
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(list python-pytest
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python-pytest-xdist
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python-setuptools
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python-setuptools-scm
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python-wheel))
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(propagated-inputs
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(list python-astropy
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python-lxml
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python-matplotlib
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python-numpy
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python-openpyxl
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python-requests
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python-scipy))
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(home-page "https://pysiaf.readthedocs.io/")
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(synopsis "Handling SIAF for space telescopes")
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(description
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"@code{pysiaf} is a python package to access, interpret, maintain, and
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generate @acronym{Handling of Science Instrument Aperture Files, SIAF}, in
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particular for JWST. Tools for applying the frame transformations, plotting,
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comparison, and validation are provided.")
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(license license:bsd-3)))
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(define-public python-pysiril
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(package
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(name "python-pysiril")
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@ -6233,6 +6358,48 @@ experiments. It is a large refactor of
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memory usage, improving performance and run in parallel with MPI.")
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(license license:bsd-3)))
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(define-public python-pyvo
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(package
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(name "python-pyvo")
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(version "1.7")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "pyvo" version))
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(sha256
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(base32 "0813ws6g6mns3g3k4xgj54pcp6hw42q47psm7q8jswqhskpxkym6"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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#:test-flags
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#~(list "--pyargs" "pyvo"
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;; XXX: Some data file was not copied in install phase:
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;; urllib.error.URLError: <urlopen error [Errno 2] No such file
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;; or directory
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;; <.../lib/python3.11/site-packages/pyvo/mivot/writer/mivot-v1.xsd>.
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"-k" (string-join
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(list "not test_all_properties"
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"test_extraction_from_votable_header")
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" and not "))))
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(native-inputs
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(list python-pytest-astropy
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python-pytest-doctestplus
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python-requests-mock
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python-setuptools
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python-setuptools-scm
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python-wheel))
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(propagated-inputs
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(list python-astropy
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python-defusedxml ; extra requirements
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python-pillow ; extra requirements
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python-requests))
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(home-page "https://github.com/astropy/pyvo")
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(synopsis "Access Virtual Observatory data and services")
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(description
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"PyVO is a package providing access to remote data and services of the
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Virtual observatory (VO) using Python.")
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(license license:bsd-3)))
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(define-public python-pyxsim
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(package
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(name "python-pyxsim")
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@ -6288,6 +6455,48 @@ export the simulated X-ray events to other software packages to simulate the
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end products of specific X-ray observatories.")
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(license license:bsd-3)))
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(define-public python-rad
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(package
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(name "python-rad")
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(version "0.27.0")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "rad" version))
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(sha256
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(base32 "04vzqkcw6la5n2jw92khmqnizs2nf5vb27nknn3c6wj1jwfwl6bv"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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;; 1131 passed, 1 skipped
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#:test-flags
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;; Ignore tests requiring python-crds to break cycle:
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;; python-rad -> python-roman-datamodels -> python-crds -> python-rad
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#~(list "--ignore=tests/test_schemas.py"
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;; E git.exc.InvalidGitRepositoryError
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"--ignore=tests/test_versioning.py"
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;; E TypeError: the JSON object must be str, bytes or bytearray,
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;; not NoneType
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"--ignore=tests/test_latest.py")))
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(native-inputs
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(list python-pytest
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python-pytest-doctestplus
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python-semantic-version
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python-setuptools-next
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python-setuptools-scm))
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(propagated-inputs
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(list python-asdf
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python-asdf-astropy))
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(home-page "https://github.com/spacetelescope/rad")
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(synopsis "Roman Attribute Dictionary")
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(description
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"@acronym{RAD, The Roman Attribute Dictionary} is package which defines
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schemas for the Nancy Grace Roman Space Telescope shared attributes for
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processing and archive. These schemas are schemas for the ASDF file file
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format, which are used by ASDF to serialize and deserialize data for the Nancy
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Grace Roman Space Telescope.")
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(license license:bsd-3)))
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(define-public python-radiospectra
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(package
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(name "python-radiospectra")
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@ -6334,6 +6543,49 @@ end products of specific X-ray observatories.")
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solar physics.")
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(license license:bsd-2)))
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(define-public python-regions
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(package
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(name "python-regions")
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(version "0.10")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "regions" version))
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(sha256
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(base32 "10cswrknj3qh9i1daynlx4ild66lwcyra5rs03h8s9j4l275274n"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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#:test-flags
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#~(list "--numprocesses" (number->string (parallel-job-count)))
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#:phases
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#~(modify-phases %standard-phases
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(replace 'check
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(lambda* (#:key tests? test-flags #:allow-other-keys)
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(with-directory-excursion #$output
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(apply invoke "pytest" "-vv" test-flags)))))))
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(propagated-inputs
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(list python-astropy
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python-h5py
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python-matplotlib
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python-numpy
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python-scipy
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python-shapely))
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(native-inputs
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(list python-cython-3
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python-extension-helpers
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python-pytest-arraydiff
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python-pytest-astropy
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python-pytest-runner
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python-pytest-xdist
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python-setuptools
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python-setuptools-scm
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python-wheel))
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(home-page "https://github.com/astropy/regions")
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(synopsis "Package for region handling")
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(description "Regions is an Astropy package for region handling.")
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(license license:bsd-3)))
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(define-public python-regularizepsf
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(package
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(name "python-regularizepsf")
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@ -7152,54 +7404,6 @@ applications, but can also be used to analyze artificial satellites in
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Low-Earth Orbit (LEO).")
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(license license:expat)))
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(define-public python-poppy
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(package
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(name "python-poppy")
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(version "1.1.2")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "poppy" version))
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(sha256
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(base32 "0mvnd9rlglb1cqhaavd2lyxnvi4xmc133x50rzzlh00xn0gyxgfq"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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#:test-flags
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#~(list "--numprocesses" (number->string (parallel-job-count)))))
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(native-inputs
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(list python-docutils
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python-pytest
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python-pytest-astropy
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python-pytest-xdist
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python-setuptools-scm
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python-wheel))
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(propagated-inputs
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;; XXX: With python-synphot (marked as optional) package added to the list
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;; it tries to download from remote host during tests and fails. Overall
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;; tests take up to 5-8min to pass.
|
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(list python-astropy
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python-matplotlib
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python-numexpr
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python-numpy
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python-scipy))
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(home-page "https://poppy-optics.readthedocs.io/")
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(synopsis "Physical Optics Propagation in Python")
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(description
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"@acronym{POPPY, Physical Optics Propagation in Python} is a Python package that
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simulates physical optical propagation including diffraction. It implements a
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flexible framework for modeling Fraunhofer and Fresnel diffraction and point
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spread function formation, particularly in the context of astronomical
|
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telescopes.
|
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|
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POPPY was developed as part of a simulation package for the James Webb Space
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Telescope, but is more broadly applicable to many kinds of imaging simulations.
|
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It is not, however, a substitute for high fidelity optical design software such
|
||||
as Zemax or Code V, but rather is intended as a lightweight alternative for
|
||||
cases for which diffractive rather than geometric optics is the topic of
|
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interest, and which require portability between platforms or ease of scripting.")
|
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(license license:bsd-3)))
|
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(define-public python-pyavm
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(package
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(name "python-pyavm")
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@ -7228,48 +7432,6 @@ interest, and which require portability between platforms or ease of scripting."
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@url{https://www.virtualastronomy.org/avm_metadata.php, vamp} project.")
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(license license:expat)))
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(define-public python-pyvo
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(package
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(name "python-pyvo")
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(version "1.7")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "pyvo" version))
|
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(sha256
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||||
(base32 "0813ws6g6mns3g3k4xgj54pcp6hw42q47psm7q8jswqhskpxkym6"))))
|
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(build-system pyproject-build-system)
|
||||
(arguments
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||||
(list
|
||||
#:test-flags
|
||||
#~(list "--pyargs" "pyvo"
|
||||
;; XXX: Some data file was not copied in install phase:
|
||||
;; urllib.error.URLError: <urlopen error [Errno 2] No such file
|
||||
;; or directory
|
||||
;; <.../lib/python3.11/site-packages/pyvo/mivot/writer/mivot-v1.xsd>.
|
||||
"-k" (string-join
|
||||
(list "not test_all_properties"
|
||||
"test_extraction_from_votable_header")
|
||||
" and not "))))
|
||||
(native-inputs
|
||||
(list python-pytest-astropy
|
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python-pytest-doctestplus
|
||||
python-requests-mock
|
||||
python-setuptools
|
||||
python-setuptools-scm
|
||||
python-wheel))
|
||||
(propagated-inputs
|
||||
(list python-astropy
|
||||
python-defusedxml ; extra requirements
|
||||
python-pillow ; extra requirements
|
||||
python-requests))
|
||||
(home-page "https://github.com/astropy/pyvo")
|
||||
(synopsis "Access Virtual Observatory data and services")
|
||||
(description
|
||||
"PyVO is a package providing access to remote data and services of the
|
||||
Virtual observatory (VO) using Python.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-reproject
|
||||
(package
|
||||
(name "python-reproject")
|
||||
|
|
@ -7949,48 +8111,6 @@ astrophysical simulations supporting PKDGRAV/Gasoline, Gadget, Gadget4/Arepo,
|
|||
N-Chilada and RAMSES AMR outputs.")
|
||||
(license license:gpl3+)))
|
||||
|
||||
(define-public python-pysiaf
|
||||
(package
|
||||
(name "python-pysiaf")
|
||||
(version "0.24.1")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "pysiaf" version))
|
||||
(sha256
|
||||
(base32 "0jgs50jmisv7b7am677q2c3kqjk0fch8gpvijzhdllhkav9wdhs0"))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
|
||||
(list
|
||||
#:test-flags
|
||||
#~(list "--numprocesses" (number->string (parallel-job-count))
|
||||
;; Disable 2 failing tests, see
|
||||
;; <https://github.com/spacetelescope/pysiaf/issues/338>
|
||||
"-k" (string-append "not test_write_jwst_siaf_xlsx"
|
||||
" and not test_write_jwst_siaf_xml" ))))
|
||||
(native-inputs
|
||||
(list python-pytest
|
||||
python-pytest-xdist
|
||||
python-setuptools
|
||||
python-setuptools-scm
|
||||
python-wheel))
|
||||
(propagated-inputs
|
||||
(list python-astropy
|
||||
python-lxml
|
||||
python-matplotlib
|
||||
python-numpy
|
||||
python-openpyxl
|
||||
python-requests
|
||||
python-scipy))
|
||||
(home-page "https://pysiaf.readthedocs.io/")
|
||||
(synopsis "Handling SIAF for space telescopes")
|
||||
(description
|
||||
"@code{pysiaf} is a python package to access, interpret, maintain, and
|
||||
generate @acronym{Handling of Science Instrument Aperture Files, SIAF}, in
|
||||
particular for JWST. Tools for applying the frame transformations, plotting,
|
||||
comparison, and validation are provided.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-pysynphot
|
||||
;; XXX: 2.0.0 was released in 2021 there are a lot of changes since that
|
||||
;; time and it failed to build with python-astropy 6.0.0, use the latest
|
||||
|
|
@ -8043,41 +8163,6 @@ photometric systems are available, and users can incorporate their own filters,
|
|||
spectra, and data.")
|
||||
(license license:bsd-3))))
|
||||
|
||||
(define-public python-asdf-standard
|
||||
(package
|
||||
(name "python-asdf-standard")
|
||||
(version "1.3.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "asdf_standard" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0r7dxbiwngpwwjdbs2vqk94v1vjsgyilswkq180d5slx74grcn2r"))))
|
||||
(build-system pyproject-build-system)
|
||||
(native-inputs
|
||||
(list python-asdf-bootstrap
|
||||
python-asdf-transform-schemas-bootstrap
|
||||
python-astropy-minimal
|
||||
python-jsonschema
|
||||
python-pypa-build
|
||||
python-pytest
|
||||
python-packaging
|
||||
python-setuptools-next
|
||||
python-setuptools-scm
|
||||
python-wheel))
|
||||
(home-page "https://asdf-standard.readthedocs.io/")
|
||||
(synopsis "ASDF standard schemas")
|
||||
(description
|
||||
"This package provides Python implementation of @acronym{ASDF, Advanced
|
||||
Scientific Data Format} - a proposed next generation interchange format for
|
||||
scientific data. ASDF aims to exist in the same middle ground that made FITS
|
||||
so successful, by being a hybrid text and binary format: containing human
|
||||
editable metadata for interchange, and raw binary data that is fast to load
|
||||
and use. Unlike FITS, the metadata is highly structured and is designed
|
||||
up-front for extensibility.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-asdf-coordinates-schemas
|
||||
(hidden-package
|
||||
(package
|
||||
|
|
@ -8151,48 +8236,6 @@ implementation package such as asdf-astropy.")
|
|||
"This package provides ASDF schemas for validating FITS tags.")
|
||||
(license license:bsd-3)))))
|
||||
|
||||
(define-public python-rad
|
||||
(package
|
||||
(name "python-rad")
|
||||
(version "0.27.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "rad" version))
|
||||
(sha256
|
||||
(base32 "04vzqkcw6la5n2jw92khmqnizs2nf5vb27nknn3c6wj1jwfwl6bv"))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
|
||||
(list
|
||||
;; 1131 passed, 1 skipped
|
||||
#:test-flags
|
||||
;; Ignore tests requiring python-crds to break cycle:
|
||||
;; python-rad -> python-roman-datamodels -> python-crds -> python-rad
|
||||
#~(list "--ignore=tests/test_schemas.py"
|
||||
;; E git.exc.InvalidGitRepositoryError
|
||||
"--ignore=tests/test_versioning.py"
|
||||
;; E TypeError: the JSON object must be str, bytes or bytearray,
|
||||
;; not NoneType
|
||||
"--ignore=tests/test_latest.py")))
|
||||
(native-inputs
|
||||
(list python-pytest
|
||||
python-pytest-doctestplus
|
||||
python-semantic-version
|
||||
python-setuptools-next
|
||||
python-setuptools-scm))
|
||||
(propagated-inputs
|
||||
(list python-asdf
|
||||
python-asdf-astropy))
|
||||
(home-page "https://github.com/spacetelescope/rad")
|
||||
(synopsis "Roman Attribute Dictionary")
|
||||
(description
|
||||
"@acronym{RAD, The Roman Attribute Dictionary} is package which defines
|
||||
schemas for the Nancy Grace Roman Space Telescope shared attributes for
|
||||
processing and archive. These schemas are schemas for the ASDF file file
|
||||
format, which are used by ASDF to serialize and deserialize data for the Nancy
|
||||
Grace Roman Space Telescope.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-radio-beam
|
||||
(package
|
||||
(name "python-radio-beam")
|
||||
|
|
@ -8230,49 +8273,6 @@ channels
|
|||
@end itemize")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-regions
|
||||
(package
|
||||
(name "python-regions")
|
||||
(version "0.10")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "regions" version))
|
||||
(sha256
|
||||
(base32 "10cswrknj3qh9i1daynlx4ild66lwcyra5rs03h8s9j4l275274n"))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
|
||||
(list
|
||||
#:test-flags
|
||||
#~(list "--numprocesses" (number->string (parallel-job-count)))
|
||||
#:phases
|
||||
#~(modify-phases %standard-phases
|
||||
(replace 'check
|
||||
(lambda* (#:key tests? test-flags #:allow-other-keys)
|
||||
(with-directory-excursion #$output
|
||||
(apply invoke "pytest" "-vv" test-flags)))))))
|
||||
(propagated-inputs
|
||||
(list python-astropy
|
||||
python-h5py
|
||||
python-matplotlib
|
||||
python-numpy
|
||||
python-scipy
|
||||
python-shapely))
|
||||
(native-inputs
|
||||
(list python-cython-3
|
||||
python-extension-helpers
|
||||
python-pytest-arraydiff
|
||||
python-pytest-astropy
|
||||
python-pytest-runner
|
||||
python-pytest-xdist
|
||||
python-setuptools
|
||||
python-setuptools-scm
|
||||
python-wheel))
|
||||
(home-page "https://github.com/astropy/regions")
|
||||
(synopsis "Package for region handling")
|
||||
(description "Regions is an Astropy package for region handling.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-roman-datamodels
|
||||
(package
|
||||
(name "python-roman-datamodels")
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue