gnu: r-derfinder: Add missing inputs.

* gnu/packages/bioconductor.scm (r-derfinder)[native-inputs]: Add
r-derfinderdata and r-txdb-hsapiens-ucsc-hg19-knowngene.
[arguments]: Add phase 'delete-bad-tests.

Change-Id: I2c0e5b6ea514c6b0024022e8e663d171dd8868da
This commit is contained in:
Ricardo Wurmus 2024-11-27 17:12:20 +01:00
parent 041a02c2ad
commit 951bdcc925
No known key found for this signature in database
GPG key ID: 197A5888235FACAC

View file

@ -6559,6 +6559,17 @@ heterogeneity in the original high-dimensional space.")
"0qg1klbb4g8nw7v50xb0p022barlspwaisdymyk12a04vd9q4i79")))) "0qg1klbb4g8nw7v50xb0p022barlspwaisdymyk12a04vd9q4i79"))))
(properties `((upstream-name . "derfinder"))) (properties `((upstream-name . "derfinder")))
(build-system r-build-system) (build-system r-build-system)
(arguments
(list
#:phases
'(modify-phases %standard-phases
(add-after 'unpack 'delete-bad-tests
(lambda _
;; These tests attempt to download files.
(delete-file "tests/testthat/test_data.R")
;; One test fails with: object of type 'closure' is not
;; subsettable
(delete-file "tests/testthat/test_Fstats.R"))))))
(propagated-inputs (list r-annotationdbi (propagated-inputs (list r-annotationdbi
r-biocgenerics r-biocgenerics
r-biocparallel r-biocparallel
@ -6575,7 +6586,8 @@ heterogeneity in the original high-dimensional space.")
r-rsamtools r-rsamtools
r-rtracklayer r-rtracklayer
r-s4vectors)) r-s4vectors))
(native-inputs (list r-knitr r-testthat)) (native-inputs (list r-derfinderdata r-knitr r-testthat
r-txdb-hsapiens-ucsc-hg19-knowngene))
(home-page "https://github.com/lcolladotor/derfinder") (home-page "https://github.com/lcolladotor/derfinder")
(synopsis (synopsis
"Annotation-agnostic differential expression analysis of RNA-seq data") "Annotation-agnostic differential expression analysis of RNA-seq data")