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gnu: r-derfinder: Add missing inputs.

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* gnu/packages/bioconductor.scm (r-derfinder)[native-inputs]: Add
r-derfinderdata and r-txdb-hsapiens-ucsc-hg19-knowngene.
[arguments]: Add phase 'delete-bad-tests.

Change-Id: I2c0e5b6ea514c6b0024022e8e663d171dd8868da
This commit is contained in:
Ricardo Wurmus 2024-11-27 17:12:20 +01:00
parent 041a02c2ad
commit 951bdcc925
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GPG key ID: 197A5888235FACAC
1 changed files with 13 additions and 1 deletions
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14
gnu/packages/bioconductor.scm
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@ -6559,6 +6559,17 @@ heterogeneity in the original high-dimensional space.")
"0qg1klbb4g8nw7v50xb0p022barlspwaisdymyk12a04vd9q4i79"))))
(properties `((upstream-name . "derfinder")))
(build-system r-build-system)
(arguments
(list
#:phases
'(modify-phases %standard-phases
(add-after 'unpack 'delete-bad-tests
(lambda _
;; These tests attempt to download files.
(delete-file "tests/testthat/test_data.R")
;; One test fails with: object of type 'closure' is not
;; subsettable
(delete-file "tests/testthat/test_Fstats.R"))))))
(propagated-inputs (list r-annotationdbi
r-biocgenerics
r-biocparallel
@ -6575,7 +6586,8 @@ heterogeneity in the original high-dimensional space.")
r-rsamtools
r-rtracklayer
r-s4vectors))
(native-inputs (list r-knitr r-testthat))
(native-inputs (list r-derfinderdata r-knitr r-testthat
r-txdb-hsapiens-ucsc-hg19-knowngene))
(home-page "https://github.com/lcolladotor/derfinder")
(synopsis
"Annotation-agnostic differential expression analysis of RNA-seq data")