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gnu: python-numcodecs: Update to 0.13.1.

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* gnu/packages/python-xyz.scm (python-numcodecs): Update to 0.13.1.
[source]: Update snippet.
[arguments]: Update selected tests.
[propagated-inputs]: Add python-coverage, python-google-crc32c,
python-importlib-metadata, and python-numpydoc; remove python-entrypoints and
python-typing-extensions.
[native-inputs]: Add python-py-cpuinfo, python-pydata-sphinx-theme,
python-pytest-cov, python-sphinx, and python-sphinx-issues.

Change-Id: Ib2dfc457923c0a435a09ce6d7879090e641b095c
This commit is contained in:
Ricardo Wurmus 2024-12-16 19:09:51 +01:00
parent 71327fc365
commit 9b13e95135
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GPG key ID: 197A5888235FACAC
1 changed files with 22 additions and 20 deletions
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42
gnu/packages/python-xyz.scm
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@ -29205,15 +29205,16 @@ tool).")
(define-public python-numcodecs (define-public python-numcodecs
(package (package
(name "python-numcodecs") (name "python-numcodecs")
;; XXX: Starting from 0.11.0 numcodecs requires NumPy 1.7 or higher. (version "0.13.1")
(version "0.10.2") ;; python-zarr does not want versions 0.14.0 or 0.14.1.
;;(version "0.14.1")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
(uri (pypi-uri "numcodecs" version)) (uri (pypi-uri "numcodecs" version))
(sha256 (sha256
(base32 (base32
"1i2rvm1f23dapcf6w3mj4877jzq5f24bhfa0fafbv1nr7xmqr0r2")) "1g09fwhgmhmw66x5gzmzhm8yhgqki3gpfi0dkhx8z2gh3n43gkx3"))
(modules '((guix build utils))) (modules '((guix build utils)))
(snippet (snippet
'(begin '(begin
@ -29224,22 +29225,13 @@ tool).")
(("os\\.name == 'posix'") (("os\\.name == 'posix'")
(string-append "os.name + platform.machine() == 'posixx86_64' or" (string-append "os.name + platform.machine() == 'posixx86_64' or"
" os.name + platform.machine() == 'posixx86'"))) " os.name + platform.machine() == 'posixx86'")))
(delete-file-recursively "c-blosc") (delete-file-recursively "c-blosc")))))
(for-each delete-file '("numcodecs/_shuffle.c"
"numcodecs/blosc.c"
"numcodecs/compat_ext.c"
"numcodecs/lz4.c"
"numcodecs/vlen.c"
"numcodecs/zstd.c"))))))
(build-system pyproject-build-system) (build-system pyproject-build-system)
(arguments (arguments
(list (list
#:test-flags #:test-flags
;; Tests fail with error: ValueError: setting an array element with a ;; zarr isn't available, because it dependes on this package.
;; sequence. The requested array has an inhomogeneous shape after 1 '(list "-k" "not test_zarr3_import")
;; dimensions. The detected shape was (3,) + inhomogeneous part.
#~(list "--deselect=numcodecs/tests/test_json.py::test_non_numpy_inputs"
"--deselect=numcodecs/tests/test_msgpacks.py::test_non_numpy_inputs")
#:phases #:phases
'(modify-phases %standard-phases '(modify-phases %standard-phases
(add-after 'unpack 'disable-avx2 (add-after 'unpack 'disable-avx2
@ -29266,13 +29258,23 @@ tool).")
(list c-blosc lz4 zlib (list c-blosc lz4 zlib
`(,zstd "lib"))) `(,zstd "lib")))
(propagated-inputs (propagated-inputs
(list python-entrypoints (list python-coverage
python-numpy python-google-crc32c
python-importlib-metadata
python-msgpack python-msgpack
python-typing-extensions)) python-numpy
python-numpydoc))
(native-inputs (native-inputs
(list python-cython python-pytest python-setuptools-scm (list python-cython
python-setuptools python-wheel)) python-py-cpuinfo
python-pydata-sphinx-theme
python-pytest
python-pytest-cov
python-setuptools
python-setuptools-scm ;for correct version
python-sphinx
python-sphinx-issues
python-wheel))
(home-page "https://github.com/zarr-developers/numcodecs") (home-page "https://github.com/zarr-developers/numcodecs")
(synopsis "Buffer compression and transformation codecs") (synopsis "Buffer compression and transformation codecs")
(description (description