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gnu: python-hdbscan: Update to 0.8.40.

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* gnu/packages/machine-learning.scm (python-hdbscan): Update to 0.8.40.
[arguments] <test-flags>: Ignore 3 test files.
<phases>: Add 'pre-check.
[native-inputs]: Remove python-nose, python-pandas, python-networkx, and
python-wheel; add python-numpy.

Change-Id: I38813d1cc16d4e90b5f0875dc93728bb42f4fa5d
This commit is contained in:
Sharlatan Hellseher 2025-09-23 13:12:28 +01:00
parent 58406f8bd0
commit 9ca78db0fe
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1 changed files with 20 additions and 13 deletions
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gnu/packages/machine-learning.scm
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@ -2213,32 +2213,39 @@ for scientific computing and data science (e.g. BLAS and OpenMP).")
(define-public python-hdbscan (define-public python-hdbscan
(package (package
(name "python-hdbscan") (name "python-hdbscan")
(version "0.8.33") (version "0.8.40")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
(uri (pypi-uri "hdbscan" version)) (uri (pypi-uri "hdbscan" version))
(sha256 (sha256
(base32 "03gr70ys1zrnp15pxzhichvrdj5bj88p6p5k0wj8vx251rgvryjp")))) (base32 "05wask431fm78n1227dhvwsmlnys9d95vxjz0y8hbvmy2zzq7qy9"))))
(build-system pyproject-build-system) (build-system pyproject-build-system)
(arguments (arguments
(list (list
#:test-flags
;; XXX: Test files which fail during test collection.
#~(list "--ignore=hdbscan/tests/test_branches.py"
"--ignore=hdbscan/tests/test_hdbscan.py"
"--ignore=hdbscan/tests/test_rsl.py")
#:phases #:phases
#~(modify-phases %standard-phases #~(modify-phases %standard-phases
(add-before 'check 'pre-check
(lambda _
(delete-file "hdbscan/tests/__init__.py")))
(add-before 'check 'build-extensions (add-before 'check 'build-extensions
(lambda _ (lambda _
(invoke "python" "setup.py" "build_ext" "--inplace")))))) (invoke "python" "setup.py" "build_ext" "--inplace"))))))
(propagated-inputs (list python-joblib (native-inputs
python-numpy (list python-cython
python-scikit-learn python-numpy
python-scipy)) python-pytest
(native-inputs (list python-cython python-setuptools))
python-nose (propagated-inputs
python-pytest (list python-joblib
python-pandas python-numpy
python-networkx python-scikit-learn
python-setuptools python-scipy))
python-wheel))
(home-page "https://github.com/scikit-learn-contrib/hdbscan") (home-page "https://github.com/scikit-learn-contrib/hdbscan")
(synopsis "High performance implementation of HDBSCAN clustering") (synopsis "High performance implementation of HDBSCAN clustering")
(description "HDBSCAN - Hierarchical Density-Based Spatial Clustering of (description "HDBSCAN - Hierarchical Density-Based Spatial Clustering of