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gnu: python-distributed: Move up.
* gnu/packages/python-science.scm (python-distributed): Sort variable alphabetically. Change-Id: I6b0b6ab2932b7cc1edf6097a6387ee633e537d88
This commit is contained in:
Sharlatan Hellseher
parent
347fd432cd
commit
a03d6d1bd6
1 changed files with 247 additions and 247 deletions
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@ -767,6 +767,253 @@ of use as pickling or @code{numpy.save}, but with the language
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interoperability offered by HDF5.")
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interoperability offered by HDF5.")
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(license license:bsd-3))))
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(license license:bsd-3))))
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(define-public python-distributed
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(package
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(name "python-distributed")
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(version "2024.4.2")
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(source
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(origin
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;; The test files are not included in the archive on pypi
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/dask/distributed")
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(commit version)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0sy9mqa8qlxsagbz8xn304csrlxhxj4b6k84yrjxdcmkp9pkx166"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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#:test-flags
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'(list "-m"
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(string-append "not slow"
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" and not flaky"
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" and not gpu"
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" and not ipython"
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" and not avoid_ci")
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"-k"
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(string-append
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;; These fail because they require network access,
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;; specifically access to 8.8.8.8.
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"not "
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(string-join
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(list
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"TestClientSecurityLoader.test_security_loader"
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"test_BatchedSend"
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"test_allowed_failures_config"
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"test_async_context_manager"
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"test_async_with"
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"test_client_repr_closed_sync"
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"test_client_is_quiet_cluster_close"
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"test_close_closed"
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"test_close_fast_without_active_handlers"
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"test_close_grace_period_for_handlers"
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"test_close_loop_sync"
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"test_close_properly"
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"test_close_twice"
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"test_compression"
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"test_connection_pool"
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"test_connection_pool_close_while_connecting"
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"test_connection_pool_detects_remote_close"
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"test_connection_pool_outside_cancellation"
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"test_connection_pool_remove"
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"test_connection_pool_respects_limit"
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"test_connection_pool_tls"
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"test_counters"
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"test_dashboard_host"
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"test_dashboard_link_cluster"
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"test_dashboard_link_inproc"
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"test_deserialize_error"
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"test_dont_override_default_get"
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"test_ensure_no_new_clients"
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"test_errors"
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"test_fail_to_pickle_target_2"
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"test_failure_doesnt_crash"
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"test_file_descriptors_dont_leak"
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"test_finished"
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"test_freeze_batched_send"
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"test_get_client_functions_spawn_clusters"
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"test_host_uses_scheduler_protocol"
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"test_identity_inproc"
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"test_identity_tcp"
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"test_large_packets_inproc"
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"test_locked_comm_drop_in_replacement"
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"test_locked_comm_intercept_read"
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"test_locked_comm_intercept_write"
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"test_messages_are_ordered_bsend"
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"test_messages_are_ordered_raw"
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"test_mixing_clients_different_scheduler"
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"test_multiple_listeners"
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"test_no_dangling_asyncio_tasks"
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"test_plugin_exception"
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"test_plugin_internal_exception"
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"test_plugin_multiple_exceptions"
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"test_ports"
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"test_preload_import_time"
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"test_preload_manager_sequence"
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"test_queue_in_task"
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"test_quiet_client_close"
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"test_rebalance_sync"
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"test_repr_localcluster"
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"test_require_encryption"
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"test_rpc_default"
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"test_rpc_inproc"
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"test_rpc_message_lifetime_default"
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"test_rpc_message_lifetime_inproc"
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"test_rpc_message_lifetime_tcp"
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"test_rpc_serialization"
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"test_rpc_tcp"
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"test_rpc_tls"
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"test_rpc_with_many_connections_inproc"
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"test_rpc_with_many_connections_tcp"
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"test_scheduler_file"
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"test_security_dict_input_no_security"
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"test_security_loader"
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"test_security_loader_ignored_if_explicit_security_provided"
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"test_security_loader_ignored_if_returns_none"
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"test_send_after_stream_start"
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"test_send_before_close"
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"test_send_before_start"
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"test_send_recv_args"
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"test_send_recv_cancelled"
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"test_sending_traffic_jam"
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"test_serializers"
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"test_server"
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"test_server_comms_mark_active_handlers"
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"test_shutdown"
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"test_shutdown_localcluster"
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"test_teardown_failure_doesnt_crash_scheduler"
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"test_tell_workers_when_peers_have_left"
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"test_threadpoolworkers_pick_correct_ioloop"
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"test_tls_listen_connect"
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"test_tls_temporary_credentials_functional"
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"test_variable_in_task"
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"test_worker_preload_text"
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"test_worker_uses_same_host_as_nanny"
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"test_nanny_timeout") ; access to 127.0.0.1
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" and not ")
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;; This seems to want to use 64GB of memory.
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" and not test_computation_object_code_dask_compute"
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;; These fail because it doesn't find dask[distributed]
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" and not test_quiet_close_process"
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;; There is no distributed.__git_revision__ property.
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" and not test_git_revision"
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;; The system monitor did not return a dictionary containing
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;; "host_disk_io.read_bps".
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" and not test_disk_config"
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;; These fail because the exception text format
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;; appears to have changed.
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" and not test_exception_text"
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" and not test_worker_bad_args"
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;; These time out
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" and not test_nanny_timeout"
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;; These tests are rather flaky
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" and not test_quiet_quit_when_cluster_leaves"
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" and not multiple_clients_restart"
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" and not test_steal_twice"
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" and not test_task_groups_update_start_stop"
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" and not test_web_preload"
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" and not test_web_preload_worker"))
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#:phases
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#~(modify-phases %standard-phases
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(add-after 'unpack 'versioneer
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(lambda _
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;; Our version of versioneer needs setup.cfg. This is adapted
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;; from pyproject.toml.
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(with-output-to-file "setup.cfg"
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(lambda ()
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(display "\
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[versioneer]
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VCS = git
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style = pep440
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versionfile_source = distributed/_version.py
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versionfile_build = distributed/_version.py
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tag_prefix =
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parentdir_prefix = distributed-
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")))
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(invoke "versioneer" "install")
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(substitute* "setup.py"
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(("versioneer.get_version\\(\\)")
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(string-append "\"" #$version "\"")))))
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(add-after 'unpack 'fix-pytest-config
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(lambda _
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;; This option is not supported by our version of pytest.
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(substitute* "pyproject.toml"
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(("--cov-config=pyproject.toml.*") ""))))
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(add-after 'unpack 'fix-references
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(lambda* (#:key outputs #:allow-other-keys)
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(substitute* '("distributed/comm/tests/test_ucx_config.py"
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"distributed/tests/test_client.py"
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"distributed/tests/test_queues.py"
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"distributed/tests/test_variable.py"
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"distributed/cli/tests/test_tls_cli.py"
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"distributed/cli/tests/test_dask_spec.py"
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"distributed/cli/tests/test_dask_worker.py"
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"distributed/cli/tests/test_dask_scheduler.py")
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(("\"dask-scheduler\"")
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(format #false "\"~a/bin/dask-scheduler\"" #$output))
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(("\"dask-worker\"")
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(format #false "\"~a/bin/dask-worker\"" #$output)))))
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(add-before 'check 'pre-check
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(lambda _
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(setenv "DISABLE_IPV6" "1")
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;; Disable job queueing
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(setenv "DASK_DISTRIBUTED__SCHEDULER__WORKER_SATURATION" "inf")
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;; Do not use dask-expr
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(setenv "DASK_DATAFRAME__QUERY_PLANNING" "False")
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;; The integration tests are all problematic to some
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;; degree. They either require network access or some
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;; other setup. We only run the tests in
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;; distributed/tests.
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(for-each (lambda (dir)
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(delete-file-recursively
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(string-append "distributed/" dir "/tests")))
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(list "cli" "comm" "dashboard" "deploy" "diagnostics"
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"http" "http/scheduler" "http/worker"
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"protocol" "shuffle"))))
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;; We need to use "." here.
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(replace 'check
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(lambda* (#:key tests? test-flags #:allow-other-keys)
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(when tests?
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(apply invoke "python" "-m" "pytest" "." "-vv" test-flags)))))))
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(propagated-inputs
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(list python-click
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python-cloudpickle
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python-cryptography
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python-dask
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python-dask-expr
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python-msgpack
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python-psutil
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python-pyyaml
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python-setuptools
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python-sortedcontainers
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python-tblib
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python-toolz
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python-tornado-6
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python-urllib3
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python-zict))
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(native-inputs
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(list python-flaky
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python-importlib-metadata
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python-pytest
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python-pytest-timeout
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python-versioneer
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python-wheel))
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(home-page "https://distributed.dask.org")
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(synopsis "Distributed scheduler for Dask")
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(description "Dask.distributed is a lightweight library for distributed
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computing in Python. It extends both the @code{concurrent.futures} and
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@code{dask} APIs to moderate sized clusters.")
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(license license:bsd-3)))
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(define-public python-ecos
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(define-public python-ecos
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(package
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(package
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(name "python-ecos")
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(name "python-ecos")
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@ -4083,253 +4330,6 @@ and more
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@end itemize")
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@end itemize")
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(license license:gpl3)))
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(license license:gpl3)))
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(define-public python-distributed
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(package
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(name "python-distributed")
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(version "2024.4.2")
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(source
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(origin
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;; The test files are not included in the archive on pypi
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/dask/distributed")
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(commit version)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0sy9mqa8qlxsagbz8xn304csrlxhxj4b6k84yrjxdcmkp9pkx166"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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#:test-flags
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'(list "-m"
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(string-append "not slow"
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" and not flaky"
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" and not gpu"
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" and not ipython"
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" and not avoid_ci")
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"-k"
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(string-append
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;; These fail because they require network access,
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;; specifically access to 8.8.8.8.
|
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"not "
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(string-join
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(list
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"TestClientSecurityLoader.test_security_loader"
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"test_BatchedSend"
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"test_allowed_failures_config"
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"test_async_context_manager"
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"test_async_with"
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"test_client_repr_closed_sync"
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||||||
"test_client_is_quiet_cluster_close"
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"test_close_closed"
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||||||
"test_close_fast_without_active_handlers"
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||||||
"test_close_grace_period_for_handlers"
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||||||
"test_close_loop_sync"
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|
||||||
"test_close_properly"
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|
||||||
"test_close_twice"
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|
||||||
"test_compression"
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"test_connection_pool"
|
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||||||
"test_connection_pool_close_while_connecting"
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||||||
"test_connection_pool_detects_remote_close"
|
|
||||||
"test_connection_pool_outside_cancellation"
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|
||||||
"test_connection_pool_remove"
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||||||
"test_connection_pool_respects_limit"
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||||||
"test_connection_pool_tls"
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"test_counters"
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"test_dashboard_host"
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"test_dashboard_link_cluster"
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"test_dashboard_link_inproc"
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"test_deserialize_error"
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"test_dont_override_default_get"
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"test_ensure_no_new_clients"
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|
||||||
"test_errors"
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||||||
"test_fail_to_pickle_target_2"
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|
||||||
"test_failure_doesnt_crash"
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|
||||||
"test_file_descriptors_dont_leak"
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|
||||||
"test_finished"
|
|
||||||
"test_freeze_batched_send"
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|
||||||
"test_get_client_functions_spawn_clusters"
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|
||||||
"test_host_uses_scheduler_protocol"
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|
||||||
"test_identity_inproc"
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|
||||||
"test_identity_tcp"
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||||||
"test_large_packets_inproc"
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||||||
"test_locked_comm_drop_in_replacement"
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||||||
"test_locked_comm_intercept_read"
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"test_locked_comm_intercept_write"
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"test_messages_are_ordered_bsend"
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"test_messages_are_ordered_raw"
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||||||
"test_mixing_clients_different_scheduler"
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"test_multiple_listeners"
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"test_no_dangling_asyncio_tasks"
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"test_plugin_exception"
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"test_plugin_internal_exception"
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||||||
"test_plugin_multiple_exceptions"
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||||||
"test_ports"
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||||||
"test_preload_import_time"
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||||||
"test_preload_manager_sequence"
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||||||
"test_queue_in_task"
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||||||
"test_quiet_client_close"
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||||||
"test_rebalance_sync"
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||||||
"test_repr_localcluster"
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||||||
"test_require_encryption"
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"test_rpc_default"
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||||||
"test_rpc_inproc"
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"test_rpc_message_lifetime_default"
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||||||
"test_rpc_message_lifetime_inproc"
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|
||||||
"test_rpc_message_lifetime_tcp"
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||||||
"test_rpc_serialization"
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||||||
"test_rpc_tcp"
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||||||
"test_rpc_tls"
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||||||
"test_rpc_with_many_connections_inproc"
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"test_rpc_with_many_connections_tcp"
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"test_scheduler_file"
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|
||||||
"test_security_dict_input_no_security"
|
|
||||||
"test_security_loader"
|
|
||||||
"test_security_loader_ignored_if_explicit_security_provided"
|
|
||||||
"test_security_loader_ignored_if_returns_none"
|
|
||||||
"test_send_after_stream_start"
|
|
||||||
"test_send_before_close"
|
|
||||||
"test_send_before_start"
|
|
||||||
"test_send_recv_args"
|
|
||||||
"test_send_recv_cancelled"
|
|
||||||
"test_sending_traffic_jam"
|
|
||||||
"test_serializers"
|
|
||||||
"test_server"
|
|
||||||
"test_server_comms_mark_active_handlers"
|
|
||||||
"test_shutdown"
|
|
||||||
"test_shutdown_localcluster"
|
|
||||||
"test_teardown_failure_doesnt_crash_scheduler"
|
|
||||||
"test_tell_workers_when_peers_have_left"
|
|
||||||
"test_threadpoolworkers_pick_correct_ioloop"
|
|
||||||
"test_tls_listen_connect"
|
|
||||||
"test_tls_temporary_credentials_functional"
|
|
||||||
"test_variable_in_task"
|
|
||||||
"test_worker_preload_text"
|
|
||||||
"test_worker_uses_same_host_as_nanny"
|
|
||||||
"test_nanny_timeout") ; access to 127.0.0.1
|
|
||||||
" and not ")
|
|
||||||
|
|
||||||
;; This seems to want to use 64GB of memory.
|
|
||||||
" and not test_computation_object_code_dask_compute"
|
|
||||||
|
|
||||||
;; These fail because it doesn't find dask[distributed]
|
|
||||||
" and not test_quiet_close_process"
|
|
||||||
|
|
||||||
;; There is no distributed.__git_revision__ property.
|
|
||||||
" and not test_git_revision"
|
|
||||||
|
|
||||||
;; The system monitor did not return a dictionary containing
|
|
||||||
;; "host_disk_io.read_bps".
|
|
||||||
" and not test_disk_config"
|
|
||||||
|
|
||||||
;; These fail because the exception text format
|
|
||||||
;; appears to have changed.
|
|
||||||
" and not test_exception_text"
|
|
||||||
" and not test_worker_bad_args"
|
|
||||||
|
|
||||||
;; These time out
|
|
||||||
" and not test_nanny_timeout"
|
|
||||||
|
|
||||||
;; These tests are rather flaky
|
|
||||||
" and not test_quiet_quit_when_cluster_leaves"
|
|
||||||
" and not multiple_clients_restart"
|
|
||||||
" and not test_steal_twice"
|
|
||||||
" and not test_task_groups_update_start_stop"
|
|
||||||
" and not test_web_preload"
|
|
||||||
" and not test_web_preload_worker"))
|
|
||||||
#:phases
|
|
||||||
#~(modify-phases %standard-phases
|
|
||||||
(add-after 'unpack 'versioneer
|
|
||||||
(lambda _
|
|
||||||
;; Our version of versioneer needs setup.cfg. This is adapted
|
|
||||||
;; from pyproject.toml.
|
|
||||||
(with-output-to-file "setup.cfg"
|
|
||||||
(lambda ()
|
|
||||||
(display "\
|
|
||||||
[versioneer]
|
|
||||||
VCS = git
|
|
||||||
style = pep440
|
|
||||||
versionfile_source = distributed/_version.py
|
|
||||||
versionfile_build = distributed/_version.py
|
|
||||||
tag_prefix =
|
|
||||||
parentdir_prefix = distributed-
|
|
||||||
")))
|
|
||||||
(invoke "versioneer" "install")
|
|
||||||
(substitute* "setup.py"
|
|
||||||
(("versioneer.get_version\\(\\)")
|
|
||||||
(string-append "\"" #$version "\"")))))
|
|
||||||
(add-after 'unpack 'fix-pytest-config
|
|
||||||
(lambda _
|
|
||||||
;; This option is not supported by our version of pytest.
|
|
||||||
(substitute* "pyproject.toml"
|
|
||||||
(("--cov-config=pyproject.toml.*") ""))))
|
|
||||||
(add-after 'unpack 'fix-references
|
|
||||||
(lambda* (#:key outputs #:allow-other-keys)
|
|
||||||
(substitute* '("distributed/comm/tests/test_ucx_config.py"
|
|
||||||
"distributed/tests/test_client.py"
|
|
||||||
"distributed/tests/test_queues.py"
|
|
||||||
"distributed/tests/test_variable.py"
|
|
||||||
"distributed/cli/tests/test_tls_cli.py"
|
|
||||||
"distributed/cli/tests/test_dask_spec.py"
|
|
||||||
"distributed/cli/tests/test_dask_worker.py"
|
|
||||||
"distributed/cli/tests/test_dask_scheduler.py")
|
|
||||||
(("\"dask-scheduler\"")
|
|
||||||
(format #false "\"~a/bin/dask-scheduler\"" #$output))
|
|
||||||
(("\"dask-worker\"")
|
|
||||||
(format #false "\"~a/bin/dask-worker\"" #$output)))))
|
|
||||||
(add-before 'check 'pre-check
|
|
||||||
(lambda _
|
|
||||||
(setenv "DISABLE_IPV6" "1")
|
|
||||||
;; Disable job queueing
|
|
||||||
(setenv "DASK_DISTRIBUTED__SCHEDULER__WORKER_SATURATION" "inf")
|
|
||||||
;; Do not use dask-expr
|
|
||||||
(setenv "DASK_DATAFRAME__QUERY_PLANNING" "False")
|
|
||||||
;; The integration tests are all problematic to some
|
|
||||||
;; degree. They either require network access or some
|
|
||||||
;; other setup. We only run the tests in
|
|
||||||
;; distributed/tests.
|
|
||||||
(for-each (lambda (dir)
|
|
||||||
(delete-file-recursively
|
|
||||||
(string-append "distributed/" dir "/tests")))
|
|
||||||
(list "cli" "comm" "dashboard" "deploy" "diagnostics"
|
|
||||||
"http" "http/scheduler" "http/worker"
|
|
||||||
"protocol" "shuffle"))))
|
|
||||||
;; We need to use "." here.
|
|
||||||
(replace 'check
|
|
||||||
(lambda* (#:key tests? test-flags #:allow-other-keys)
|
|
||||||
(when tests?
|
|
||||||
(apply invoke "python" "-m" "pytest" "." "-vv" test-flags)))))))
|
|
||||||
(propagated-inputs
|
|
||||||
(list python-click
|
|
||||||
python-cloudpickle
|
|
||||||
python-cryptography
|
|
||||||
python-dask
|
|
||||||
python-dask-expr
|
|
||||||
python-msgpack
|
|
||||||
python-psutil
|
|
||||||
python-pyyaml
|
|
||||||
python-setuptools
|
|
||||||
python-sortedcontainers
|
|
||||||
python-tblib
|
|
||||||
python-toolz
|
|
||||||
python-tornado-6
|
|
||||||
python-urllib3
|
|
||||||
python-zict))
|
|
||||||
(native-inputs
|
|
||||||
(list python-flaky
|
|
||||||
python-importlib-metadata
|
|
||||||
python-pytest
|
|
||||||
python-pytest-timeout
|
|
||||||
python-versioneer
|
|
||||||
python-wheel))
|
|
||||||
(home-page "https://distributed.dask.org")
|
|
||||||
(synopsis "Distributed scheduler for Dask")
|
|
||||||
(description "Dask.distributed is a lightweight library for distributed
|
|
||||||
computing in Python. It extends both the @code{concurrent.futures} and
|
|
||||||
@code{dask} APIs to moderate sized clusters.")
|
|
||||||
(license license:bsd-3)))
|
|
||||||
|
|
||||||
(define-public python-plotnine
|
(define-public python-plotnine
|
||||||
(package
|
(package
|
||||||
(name "python-plotnine")
|
(name "python-plotnine")
|
||||||
|
|
|
||||||
Loading…
Add table
Add a link
Reference in a new issue